Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_A01
         (903 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    26   0.41 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   1.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.8  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   8.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   8.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   8.8  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 26.2 bits (55), Expect = 0.41
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 617 RGPANTSWESGASALEHALKLESDVTNSI 703
           R P   SW S  + +  A KL+ ++ NSI
Sbjct: 149 RTPTEASWHSPEAHISVAQKLQKEIPNSI 177


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 686  DVTNSIRGGHQDLREXLQRLPPGRLFVRGI 775
            +VT  +RG      + L++LP G LF++ +
Sbjct: 1307 EVTWKVRGAVLQSSDRLRQLPEGSLFIKEV 1336


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 705 RMLLVTSLSSLRACSRADAPLSHDVFAGPLYVMRSV 598
           R+LL++++  +  CS  +  L  D+F G   ++R V
Sbjct: 10  RILLISAVFCVGLCSEDEERLVRDLFRGYNKLIRPV 45


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 35  NVRISLAVNTGWPPYRC 85
           N+R  L V+TG  PY C
Sbjct: 52  NLRRHLRVHTGERPYAC 68


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 600 PTSSRTGAPQTRRGRAAHQPS 662
           P+SS + +P  +   AA QPS
Sbjct: 521 PSSSTSSSPPAKGAAAAGQPS 541


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 122 ANRTYLFEFPANYKSPSTPVCVKA 193
           A RTYLF+   N      P  V A
Sbjct: 545 AGRTYLFDLDYNESEEQCPYTVDA 568


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,217
Number of Sequences: 438
Number of extensions: 3793
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)