Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_P23
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    43   5e-05
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   8.2  

>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 22/47 (46%), Positives = 30/47 (63%)
 Frame = +3

Query: 12  PYLXVXREPLNVXYLGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
           P + V  E L+    GMLLE+ NSELL +LE   +L  +V+EA+ VL
Sbjct: 595 PKVFVREEKLSGKITGMLLEMPNSELLELLEDDSALNERVNEAIGVL 641


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 500 HFSLIYYLILWELALXSFIYYYFHISF*LIPWIENLVSSNLLMLHVW 640
           H+SL   L+   L L   +Y +  I+  L+P++E   SS L + HV+
Sbjct: 72  HYSLCLSLVA--LLLFYTLYPFQSITLPLMPFLEKTESSILTISHVY 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,259,654
Number of Sequences: 5004
Number of extensions: 33709
Number of successful extensions: 68
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)