Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_P23
(888 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48501-1|CAA88401.1| 522|Homo sapiens polyadenylate binding pro... 58 6e-08
Y00345-1|CAA68428.1| 633|Homo sapiens protein ( Human mRNA for ... 58 6e-08
U75686-1|AAB97309.1| 644|Homo sapiens polyadenylate binding pro... 58 6e-08
U68104-1|AAD08718.1| 636|Homo sapiens poly(A)-binding protein p... 58 6e-08
U33818-1|AAC50350.1| 644|Homo sapiens inducible poly(A)-binding... 58 6e-08
BC094755-1|AAH94755.1| 660|Homo sapiens PABPC4 protein protein. 58 6e-08
BC071591-1|AAH71591.1| 660|Homo sapiens PABPC4 protein protein. 58 6e-08
BC065540-1|AAH65540.1| 631|Homo sapiens PABPC4 protein protein. 58 6e-08
BC041863-1|AAH41863.1| 636|Homo sapiens poly(A) binding protein... 58 6e-08
BC023520-1|AAH23520.1| 636|Homo sapiens poly(A) binding protein... 58 6e-08
BC015958-1|AAH15958.1| 636|Homo sapiens PABPC1 protein protein. 58 6e-08
AL845289-3|CAI12300.1| 644|Homo sapiens poly(A) binding protein... 58 6e-08
AL845289-2|CAI12298.1| 660|Homo sapiens poly(A) binding protein... 58 6e-08
AL845289-1|CAI12299.1| 615|Homo sapiens poly(A) binding protein... 58 6e-08
AL365277-15|CAI16425.1| 410|Homo sapiens poly(A) binding protei... 58 6e-08
AL365277-13|CAI16423.1| 194|Homo sapiens poly(A) binding protei... 58 6e-08
AL365277-4|CAI16414.1| 644|Homo sapiens poly(A) binding protein... 58 6e-08
AL365277-3|CAI16412.1| 660|Homo sapiens poly(A) binding protein... 58 6e-08
AL365277-2|CAI16413.1| 615|Homo sapiens poly(A) binding protein... 58 6e-08
AB208962-1|BAD92199.1| 358|Homo sapiens PABPC4 protein variant ... 58 6e-08
AK222917-1|BAD96637.1| 371|Homo sapiens PABPC4 protein variant ... 56 2e-07
DQ120640-1|ABB92425.1| 630|Homo sapiens PABP3 protein. 55 3e-07
BC045608-1|AAH45608.1| 631|Homo sapiens poly(A) binding protein... 55 3e-07
BC027617-1|AAH27617.1| 631|Homo sapiens poly(A) binding protein... 55 3e-07
AL359757-1|CAH70805.1| 631|Homo sapiens poly(A) binding protein... 55 3e-07
AF132026-1|AAG38953.1| 631|Homo sapiens testis-specific poly(A)... 55 3e-07
AK127880-1|BAC87174.1| 146|Homo sapiens protein ( Homo sapiens ... 53 1e-06
AL109839-10|CAI95639.1| 168|Homo sapiens chromosome 20 open rea... 53 2e-06
AL109839-1|CAI95631.1| 614|Homo sapiens chromosome 20 open read... 53 2e-06
AL008725-4|CAI95662.1| 614|Homo sapiens chromosome 20 open read... 53 2e-06
AL109839-8|CAI95637.1| 149|Homo sapiens chromosome 20 open read... 40 0.009
AL109839-9|CAI95638.1| 171|Homo sapiens chromosome 20 open read... 39 0.021
AL109839-7|CAI95636.1| 151|Homo sapiens chromosome 20 open read... 39 0.021
U95000-1|AAF88143.1| 2798|Homo sapiens hyd protein protein. 34 0.60
AF006010-1|AAD01259.2| 2799|Homo sapiens progestin induced prote... 34 0.60
AB020703-1|BAA74919.3| 2820|Homo sapiens KIAA0896 protein protein. 34 0.60
>Z48501-1|CAA88401.1| 522|Homo sapiens polyadenylate binding
protein II protein.
Length = 522
Score = 57.6 bits (133), Expect = 6e-08
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 469 GMLLEIDNSELLHMLESPESLRSKVDEAVAVL 500
>Y00345-1|CAA68428.1| 633|Homo sapiens protein ( Human mRNA for
polyA binding protein. ).
Length = 633
Score = 57.6 bits (133), Expect = 6e-08
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 580 GMLLEIDNSELLHMLESPESLRSKVDEAVAVL 611
>U75686-1|AAB97309.1| 644|Homo sapiens polyadenylate binding
protein protein.
Length = 644
Score = 57.6 bits (133), Expect = 6e-08
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 592 GMLLEIDNSELLHMLESPESLRSKVDEAVAVL 623
>U68104-1|AAD08718.1| 636|Homo sapiens poly(A)-binding protein
protein.
Length = 636
Score = 57.6 bits (133), Expect = 6e-08
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 583 GMLLEIDNSELLHMLESPESLRSKVDEAVAVL 614
>U33818-1|AAC50350.1| 644|Homo sapiens inducible poly(A)-binding
protein protein.
Length = 644
Score = 57.6 bits (133), Expect = 6e-08
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 592 GMLLEIDNSELLHMLESPESLRSKVDEAVAVL 623
>BC094755-1|AAH94755.1| 660|Homo sapiens PABPC4 protein protein.
Length = 660
Score = 57.6 bits (133), Expect = 6e-08
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 608 GMLLEIDNSELLHMLESPESLRSKVDEAVAVL 639
>BC071591-1|AAH71591.1| 660|Homo sapiens PABPC4 protein protein.
Length = 660
Score = 57.6 bits (133), Expect = 6e-08
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 608 GMLLEIDNSELLHMLESPESLRSKVDEAVAVL 639
>BC065540-1|AAH65540.1| 631|Homo sapiens PABPC4 protein protein.
Length = 631
Score = 57.6 bits (133), Expect = 6e-08
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 579 GMLLEIDNSELLHMLESPESLRSKVDEAVAVL 610
>BC041863-1|AAH41863.1| 636|Homo sapiens poly(A) binding protein,
cytoplasmic 1 protein.
Length = 636
Score = 57.6 bits (133), Expect = 6e-08
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 583 GMLLEIDNSELLHMLESPESLRSKVDEAVAVL 614
>BC023520-1|AAH23520.1| 636|Homo sapiens poly(A) binding protein,
cytoplasmic 1 protein.
Length = 636
Score = 57.6 bits (133), Expect = 6e-08
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 583 GMLLEIDNSELLHMLESPESLRSKVDEAVAVL 614
>BC015958-1|AAH15958.1| 636|Homo sapiens PABPC1 protein protein.
Length = 636
Score = 57.6 bits (133), Expect = 6e-08
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 583 GMLLEIDNSELLHMLESPESLRSKVDEAVAVL 614
>AL845289-3|CAI12300.1| 644|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibletaining 6 protein.
Length = 644
Score = 57.6 bits (133), Expect = 6e-08
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 592 GMLLEIDNSELLHMLESPESLRSKVDEAVAVL 623
>AL845289-2|CAI12298.1| 660|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibleseudogene protein.
Length = 660
Score = 57.6 bits (133), Expect = 6e-08
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 608 GMLLEIDNSELLHMLESPESLRSKVDEAVAVL 639
>AL845289-1|CAI12299.1| 615|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibleeudogene protein.
Length = 615
Score = 57.6 bits (133), Expect = 6e-08
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 563 GMLLEIDNSELLHMLESPESLRSKVDEAVAVL 594
>AL365277-15|CAI16425.1| 410|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblela) protein.
Length = 410
Score = 57.6 bits (133), Expect = 6e-08
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 358 GMLLEIDNSELLHMLESPESLRSKVDEAVAVL 389
>AL365277-13|CAI16423.1| 194|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblela) protein.
Length = 194
Score = 57.6 bits (133), Expect = 6e-08
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 146 GMLLEIDNSELLHMLESPESLRSKVDEAVAVL 177
>AL365277-4|CAI16414.1| 644|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblepeptide, antigen CD29 includes
protein.
Length = 644
Score = 57.6 bits (133), Expect = 6e-08
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 592 GMLLEIDNSELLHMLESPESLRSKVDEAVAVL 623
>AL365277-3|CAI16412.1| 660|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducible) pseudogene protein.
Length = 660
Score = 57.6 bits (133), Expect = 6e-08
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 608 GMLLEIDNSELLHMLESPESLRSKVDEAVAVL 639
>AL365277-2|CAI16413.1| 615|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblely, member 5 protein.
Length = 615
Score = 57.6 bits (133), Expect = 6e-08
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 563 GMLLEIDNSELLHMLESPESLRSKVDEAVAVL 594
>AB208962-1|BAD92199.1| 358|Homo sapiens PABPC4 protein variant
protein.
Length = 358
Score = 57.6 bits (133), Expect = 6e-08
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLEIDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 306 GMLLEIDNSELLHMLESPESLRSKVDEAVAVL 337
>AK222917-1|BAD96637.1| 371|Homo sapiens PABPC4 protein variant
protein.
Length = 371
Score = 56.0 bits (129), Expect = 2e-07
Identities = 27/32 (84%), Positives = 29/32 (90%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLEIDNSELLHMLE ESL++KVDEA AVL
Sbjct: 319 GMLLEIDNSELLHMLESPESLRSKVDEAAAVL 350
>DQ120640-1|ABB92425.1| 630|Homo sapiens PABP3 protein.
Length = 630
Score = 55.2 bits (127), Expect = 3e-07
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLEIDNSELL+MLE ESL++KVDEAVAVL
Sbjct: 578 GMLLEIDNSELLYMLESPESLRSKVDEAVAVL 609
>BC045608-1|AAH45608.1| 631|Homo sapiens poly(A) binding protein,
cytoplasmic 3 protein.
Length = 631
Score = 55.2 bits (127), Expect = 3e-07
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLEIDNSELL+MLE ESL++KVDEAVAVL
Sbjct: 578 GMLLEIDNSELLYMLESPESLRSKVDEAVAVL 609
>BC027617-1|AAH27617.1| 631|Homo sapiens poly(A) binding protein,
cytoplasmic 3 protein.
Length = 631
Score = 55.2 bits (127), Expect = 3e-07
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLEIDNSELL+MLE ESL++KVDEAVAVL
Sbjct: 578 GMLLEIDNSELLYMLESPESLRSKVDEAVAVL 609
>AL359757-1|CAH70805.1| 631|Homo sapiens poly(A) binding protein,
cytoplasmic 3 protein.
Length = 631
Score = 55.2 bits (127), Expect = 3e-07
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLEIDNSELL+MLE ESL++KVDEAVAVL
Sbjct: 578 GMLLEIDNSELLYMLESPESLRSKVDEAVAVL 609
>AF132026-1|AAG38953.1| 631|Homo sapiens testis-specific
poly(A)-binding protein protein.
Length = 631
Score = 55.2 bits (127), Expect = 3e-07
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLEIDNSELL+MLE ESL++KVDEAVAVL
Sbjct: 578 GMLLEIDNSELLYMLESPESLRSKVDEAVAVL 609
>AK127880-1|BAC87174.1| 146|Homo sapiens protein ( Homo sapiens
cDNA FLJ45986 fis, clone PUAEN2000594, highly similar
to Polyadenylate-binding protein 1. ).
Length = 146
Score = 53.2 bits (122), Expect = 1e-06
Identities = 26/32 (81%), Positives = 29/32 (90%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
G+LLEIDNSELLHML+ ESL +KVDEAVAVL
Sbjct: 93 GVLLEIDNSELLHMLKSPESLHSKVDEAVAVL 124
>AL109839-10|CAI95639.1| 168|Homo sapiens chromosome 20 open
reading frame 119 protein.
Length = 168
Score = 52.8 bits (121), Expect = 2e-06
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLEIDNSELL MLE ESL AK+DEAVAVL
Sbjct: 123 GMLLEIDNSELLLMLESPESLHAKIDEAVAVL 154
>AL109839-1|CAI95631.1| 614|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 614
Score = 52.8 bits (121), Expect = 2e-06
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLEIDNSELL MLE ESL AK+DEAVAVL
Sbjct: 569 GMLLEIDNSELLLMLESPESLHAKIDEAVAVL 600
>AL008725-4|CAI95662.1| 614|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 614
Score = 52.8 bits (121), Expect = 2e-06
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLEIDNSELL MLE ESL AK+DEAVAVL
Sbjct: 569 GMLLEIDNSELLLMLESPESLHAKIDEAVAVL 600
>AL109839-8|CAI95637.1| 149|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 149
Score = 40.3 bits (90), Expect = 0.009
Identities = 20/25 (80%), Positives = 21/25 (84%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKV 131
GMLLEIDNSELL MLE ESL AK+
Sbjct: 123 GMLLEIDNSELLLMLESPESLHAKI 147
>AL109839-9|CAI95638.1| 171|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 171
Score = 39.1 bits (87), Expect = 0.021
Identities = 20/24 (83%), Positives = 20/24 (83%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAK 128
GMLLEIDNSELL MLE ESL AK
Sbjct: 123 GMLLEIDNSELLLMLESPESLHAK 146
>AL109839-7|CAI95636.1| 151|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 151
Score = 39.1 bits (87), Expect = 0.021
Identities = 20/24 (83%), Positives = 20/24 (83%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAK 128
GMLLEIDNSELL MLE ESL AK
Sbjct: 104 GMLLEIDNSELLLMLESPESLHAK 127
>U95000-1|AAF88143.1| 2798|Homo sapiens hyd protein protein.
Length = 2798
Score = 34.3 bits (75), Expect = 0.60
Identities = 15/32 (46%), Positives = 25/32 (78%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLE+ ++LL +L +SL+A+VDEA+ ++
Sbjct: 2417 GMLLELSPAQLLLLLASEDSLRARVDEAMELI 2448
>AF006010-1|AAD01259.2| 2799|Homo sapiens progestin induced protein
protein.
Length = 2799
Score = 34.3 bits (75), Expect = 0.60
Identities = 15/32 (46%), Positives = 25/32 (78%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLE+ ++LL +L +SL+A+VDEA+ ++
Sbjct: 2418 GMLLELSPAQLLLLLASEDSLRARVDEAMELI 2449
>AB020703-1|BAA74919.3| 2820|Homo sapiens KIAA0896 protein protein.
Length = 2820
Score = 34.3 bits (75), Expect = 0.60
Identities = 15/32 (46%), Positives = 25/32 (78%)
Frame = +3
Query: 57 GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
GMLLE+ ++LL +L +SL+A+VDEA+ ++
Sbjct: 2440 GMLLELSPAQLLLLLASEDSLRARVDEAMELI 2471
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,489,831
Number of Sequences: 237096
Number of extensions: 1077469
Number of successful extensions: 1573
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1573
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11381686510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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