Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_P23
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U24123-1|AAA65224.1|  646|Caenorhabditis elegans polyadenylate-b...    45   8e-05
AL032631-4|CAE54917.1|  586|Caenorhabditis elegans Hypothetical ...    45   8e-05
AL032631-3|CAE54916.1|  583|Caenorhabditis elegans Hypothetical ...    45   8e-05
AL032631-2|CAA21572.1|  646|Caenorhabditis elegans Hypothetical ...    45   8e-05
Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical pr...    42   4e-04
U53151-3|AAB37067.2|  388|Caenorhabditis elegans Serpentine rece...    28   7.8  
U53151-2|AAN73859.1|  385|Caenorhabditis elegans Serpentine rece...    28   7.8  

>U24123-1|AAA65224.1|  646|Caenorhabditis elegans
           polyadenylate-binding protein protein.
          Length = 646

 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 20/32 (62%), Positives = 27/32 (84%)
 Frame = +3

Query: 57  GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
           GM+LEIDNSEL+ ML+ +E  ++KVDEA +VL
Sbjct: 609 GMMLEIDNSELIMMLQDSELFRSKVDEAASVL 640


>AL032631-4|CAE54917.1|  586|Caenorhabditis elegans Hypothetical
           protein Y106G6H.2c protein.
          Length = 586

 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 20/32 (62%), Positives = 27/32 (84%)
 Frame = +3

Query: 57  GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
           GM+LEIDNSEL+ ML+ +E  ++KVDEA +VL
Sbjct: 549 GMMLEIDNSELIMMLQDSELFRSKVDEAASVL 580


>AL032631-3|CAE54916.1|  583|Caenorhabditis elegans Hypothetical
           protein Y106G6H.2b protein.
          Length = 583

 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 20/32 (62%), Positives = 27/32 (84%)
 Frame = +3

Query: 57  GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
           GM+LEIDNSEL+ ML+ +E  ++KVDEA +VL
Sbjct: 546 GMMLEIDNSELIMMLQDSELFRSKVDEAASVL 577


>AL032631-2|CAA21572.1|  646|Caenorhabditis elegans Hypothetical
           protein Y106G6H.2a protein.
          Length = 646

 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 20/32 (62%), Positives = 27/32 (84%)
 Frame = +3

Query: 57  GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
           GM+LEIDNSEL+ ML+ +E  ++KVDEA +VL
Sbjct: 609 GMMLEIDNSELIMMLQDSELFRSKVDEAASVL 640


>Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical
           protein F18H3.3a protein.
          Length = 692

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 19/32 (59%), Positives = 26/32 (81%)
 Frame = +3

Query: 57  GMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 152
           GM+LEIDN+EL+ ML+ AE  ++KV+EA  VL
Sbjct: 644 GMMLEIDNAELIMMLQDAELFRSKVEEAFGVL 675


>U53151-3|AAB37067.2|  388|Caenorhabditis elegans Serpentine
           receptor, class r protein9 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 482 ENFRYIHFSLIYYLILWELALXSFIYYYF 568
           +NFR +H   + + I W +A+ S+I Y F
Sbjct: 127 DNFRILHILALCFSIPWFVAIMSWIIYNF 155


>U53151-2|AAN73859.1|  385|Caenorhabditis elegans Serpentine
           receptor, class r protein10 protein.
          Length = 385

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 482 ENFRYIHFSLIYYLILWELALXSFIYYYF 568
           +NFR +H   + + I W +A+ S+I Y F
Sbjct: 124 DNFRILHILALCFSIPWFVAMMSWIIYNF 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,359,615
Number of Sequences: 27780
Number of extensions: 190394
Number of successful extensions: 404
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)