Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_P22
         (953 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.76 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   2.3  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   7.1  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 832 PPXPPPPXPPP 864
           PP P PP PPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 24.2 bits (50), Expect = 1.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 513 PPPXXPPPXPXAPGP 557
           P P  PPP P + GP
Sbjct: 339 PKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 816 PPXXPPPXPPPPXXXP 863
           PP   PP PPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 4.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 817 PPXXXPPXPPPPXPPP 864
           PP   PP PPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 813 PPPXXPPPXPP 845
           PP   PPP PP
Sbjct: 338 PPKPAPPPPPP 348


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 13/40 (32%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
 Frame = +3

Query: 513 PPPXXPPPXPXA-PGPXXXXGGXPPPXGRXPXPPXXPGXP 629
           P    P P P     P     G PP   + P P   PG P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 24.2 bits (50), Expect = 1.8
 Identities = 11/24 (45%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
 Frame = +1

Query: 808 GXPP-PXXXPPXPPPPXPPPXGXP 876
           G PP P   PP   PP  PP   P
Sbjct: 37  GSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.0 bits (47), Expect = 4.1
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +1

Query: 820 PXXXPPXPPPPXPPPXGXPRXP 885
           P    P  P   PPP G P  P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAP 55



 Score = 21.8 bits (44), Expect = 9.4
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +1

Query: 805 PGXPPPXXXPPXPPPPXPP 861
           P   PP   PP  PP   P
Sbjct: 42  PSQGPPPGGPPGAPPSQNP 60


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 828  PPPXPPPP 851
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 841  PPPPXPPP 864
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 22.2 bits (45), Expect(2) = 1.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 841  PPPPXPPPXG 870
            PPPP PP  G
Sbjct: 1356 PPPPPPPSSG 1365



 Score = 20.6 bits (41), Expect(2) = 1.1
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 832  PPXPPPP 852
            PP PPPP
Sbjct: 1355 PPPPPPP 1361


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = -2

Query: 925 GPXXPXXGGXGXXXXPGXXPXGXXXGGGGXGGGXXGG 815
           GP     GG       G    G   GGGG G G   G
Sbjct: 21  GPGSSSAGGVVTGASGGSIVVGANNGGGGGGLGIASG 57


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 16/57 (28%), Positives = 16/57 (28%)
 Frame = +1

Query: 778 PPXXXXXXXPGXPPPXXXPPXPPPPXPPPXGXPRXPXXAXXPXXGXXXXPXPXXPPP 948
           PP       P   P    P   P P PP     R P  A          P P  P P
Sbjct: 111 PPHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRREP-EAEPGNNRPVYIPQPRPPHP 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,275
Number of Sequences: 438
Number of extensions: 8903
Number of successful extensions: 32
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31323201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)