Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_P20
         (991 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0479 + 3606663-3607448                                           33   0.35 
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    32   0.61 
11_06_0610 - 25449085-25453284                                         31   1.9  
07_01_0080 + 587674-588510                                             29   4.3  
02_05_0686 - 30900748-30902167,30903442-30904742                       25   6.3  
12_02_0299 - 17051570-17052474,17053542-17053755                       29   7.6  

>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 33.1 bits (72), Expect = 0.35
 Identities = 19/57 (33%), Positives = 20/57 (35%)
 Frame = +3

Query: 663 PXXPPXXRXSXQKGPTPGGA*XXNXAFPPWXGSPPGXLXXPDPPRFXPEXRXPPFXP 833
           P  PP       +GP P G        P   G PPG      PP F P    PP  P
Sbjct: 198 PGGPPPPPGPFMRGPPPMGPPQVRPGMP--GGPPPGMRPGMPPPPFRPGMPPPPPGP 252



 Score = 29.9 bits (64), Expect = 3.3
 Identities = 20/55 (36%), Positives = 20/55 (36%)
 Frame = +3

Query: 630 PLPGVXHRLXPPXXPPXXRXSXQKGPTPGGA*XXNXAFPPWXGSPPGXLXXPDPP 794
           P PG   R  PP  PP  R     GP PG         PP    PP     P PP
Sbjct: 203 PPPGPFMRGPPPMGPPQVRPGMPGGPPPG----MRPGMPP----PPFRPGMPPPP 249



 Score = 29.1 bits (62), Expect = 5.7
 Identities = 18/40 (45%), Positives = 19/40 (47%)
 Frame = +1

Query: 652 GSXPPXDXPXIDXQXKRGPPPEGPXXQTXRSPPGXGPPXG 771
           G  PP   P +     RGPPP GP  Q     PG GPP G
Sbjct: 199 GGPPPPPGPFM-----RGPPPMGP-PQVRPGMPG-GPPPG 231


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 32.3 bits (70), Expect = 0.61
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = +3

Query: 630 PLPGVXHRLXPPXXPPXXRXSXQKGPTPGGA*XXNXAFPPWXGSPPGXLXXPDP 791
           PLP   ++  PP  PP    + +K P P          PP    PPG +  P P
Sbjct: 737 PLPAAANKRNPPAPPPPPLMTGKKAPAPPPP-------PPQAPKPPGTVPPPPP 783



 Score = 29.9 bits (64), Expect = 3.3
 Identities = 18/66 (27%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
 Frame = +3

Query: 630 PLPGVXHRLXPPXXPPXXRXSXQKGPTPGGA*XXNXAFPPWXGSPP-GXLXXPDPPRFXP 806
           P PG+ ++   P  PP    S  + PT           PP    PP      P  P   P
Sbjct: 654 PAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPPPLPPANRTNGPGVPSAPP 713

Query: 807 EXRXPP 824
               PP
Sbjct: 714 PPPPPP 719


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 24/85 (28%), Positives = 29/85 (34%)
 Frame = +1

Query: 523 SXXPKXGXPXATKSGXNARKKXXQKALPNAGTXKRXPFLXSTIGSXPPXDXPXIDXQXKR 702
           S   + G P    SG   +    +KA P            +T  S PP +          
Sbjct: 503 SPPAEYGAPPPPSSGWLPKSPERKKAPPPQAEPPTEYSPPATPESSPPPEGKSPPTPTAS 562

Query: 703 GPPPEGPXXQTXRSPPGXGPPXGXS 777
             PP  P   T  SPP  GPP G S
Sbjct: 563 HSPPPVPEGHTP-SPPKSGPPAGES 586


>07_01_0080 + 587674-588510
          Length = 278

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
 Frame = +1

Query: 685 DXQXKRGPPPEGPXXQTXRSPPGXGPPXGXSXFRTPLGFXXKXGXPLXXLSGKPV-RFXK 861
           D   +R PPP  P   +   PP   PP        P  F  +   P    SG  V RF K
Sbjct: 85  DGMFRRPPPPPPPPPSSGSPPPPPPPPPPPPPPPPPPLFTRRSHAPQDNSSGTGVPRFYK 144

Query: 862 XXAPR 876
              P+
Sbjct: 145 LEFPK 149


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 25.0 bits (52), Expect(2) = 6.3
 Identities = 13/54 (24%), Positives = 17/54 (31%)
 Frame = +1

Query: 604 PNAGTXKRXPFLXSTIGSXPPXDXPXIDXQXKRGPPPEGPXXQTXRSPPGXGPP 765
           P   +  R   + +   + P    P         PPP  P       PP  GPP
Sbjct: 292 PGRESPSRPQSIAAAAVASPAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPP 345



 Score = 22.2 bits (45), Expect(2) = 6.3
 Identities = 10/29 (34%), Positives = 10/29 (34%)
 Frame = +1

Query: 886 PHPXGGXXXPXPKXGPXXXKXPPCXXPXP 972
           P P  G   P P  GP     P    P P
Sbjct: 338 PPPPKGPPPPPPAKGPPPPPPPKGPSPPP 366


>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = +3

Query: 744 PPWXGSPPGXLXXPD-PPRFXPEXRXPPFXP 833
           PPW  +PP     P  PP F P    PP  P
Sbjct: 265 PPWPWAPPPAFPFPHLPPIFSPPSPPPPPPP 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.141    0.460 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,492,497
Number of Sequences: 37544
Number of extensions: 320718
Number of successful extensions: 578
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2893540780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)