Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_P20
(991 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 36 0.045
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 35 0.10
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 33 0.31
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 32 0.55
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 32 0.73
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.9
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.9
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 29 3.9
U52002-6|AAB37732.1| 142|Caenorhabditis elegans Hypothetical pr... 29 5.1
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 29 6.8
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 28 8.9
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 35.9 bits (79), Expect = 0.045
Identities = 30/98 (30%), Positives = 33/98 (33%), Gaps = 9/98 (9%)
Frame = +1
Query: 700 RGPP----PEGPXXQTXRSPPGX---GPPXGXSXFR--TPLGFXXKXGXPLXXLSGKPVR 852
RGPP P GP + PP PP G +R P G P G P
Sbjct: 76 RGPPGPSGPSGPPVYHNQGPPRGYPPPPPQGADTWRGAPPPAHHGHFGPPGHHFQGPPQH 135
Query: 853 FXKXXAPRLGFPHPXGGXXXPXPKXGPXXXKXPPCXXP 966
F PR FP P G P GP + P P
Sbjct: 136 FPPGP-PRPHFPGPPGPHRPPEHYPGPPRPQAPAAPPP 172
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 34.7 bits (76), Expect = 0.10
Identities = 28/84 (33%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Frame = +1
Query: 604 PNAGTXKRXPFLXSTIGSXPPXDXPXIDXQXKRGPP-PEGPXXQTXRSP--PGXGPPXGX 774
P + T P ST P P Q +GPP P GP P PG GPP
Sbjct: 684 PTSSTPSDTP-APSTSVPPPTSVQPPQPQQPPQGPPGPPGPQQHPGPYPGYPGYGPPGA- 741
Query: 775 SXFRTPLGFXXKXGXPLXXLSGKP 846
R P GF G P G P
Sbjct: 742 --MRPPAGFAPPPGAPYGYPPGAP 763
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 33.1 bits (72), Expect = 0.31
Identities = 28/108 (25%), Positives = 32/108 (29%), Gaps = 1/108 (0%)
Frame = +1
Query: 646 TIGSXPPXDXPXIDXQXKRGPPPE-GPXXQTXRSPPGXGPPXGXSXFRTPLGFXXKXGXP 822
+ G+ PP Q GPPP PP GPP + + G G P
Sbjct: 347 SFGAPPPQQFHAPSPQSFGGPPPPVSSAPGNFAPPPQSGPPGAFAPPPSAFGAPQGPGGP 406
Query: 823 LXXLSGKPVRFXKXXAPRLGFPHPXGGXXXPXPKXGPXXXKXPPCXXP 966
G P G P G P P GP PP P
Sbjct: 407 GGY--GPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPTGFP 452
Score = 31.1 bits (67), Expect = 1.3
Identities = 33/119 (27%), Positives = 41/119 (34%), Gaps = 15/119 (12%)
Frame = +1
Query: 643 STIGSXPPXDXPXIDXQXKRGPPPEGPXXQ-TXRSPP-------GXGPPXG--XSXFRTP 792
S+I S P Q GPPP GP + +PP G PP G F P
Sbjct: 275 SSISSTPVQQQGFAPPQQFGGPPPSGPPSEYGGYAPPQQQQQQFGAPPPQGAPQQGFGAP 334
Query: 793 LGFXXKXGXPLXXLSGKPVRFXKXXAPR-LGFPHP----XGGXXXPXPKXGPXXXKXPP 954
+ G P P + +P+ G P P G P P+ GP PP
Sbjct: 335 PQGPPQGGPPQGSFGAPPPQQFHAPSPQSFGGPPPPVSSAPGNFAPPPQSGPPGAFAPP 393
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 32.3 bits (70), Expect = 0.55
Identities = 28/97 (28%), Positives = 32/97 (32%), Gaps = 4/97 (4%)
Frame = +1
Query: 676 PXIDXQXKRGPPPEGPXXQTXRSPPGXGPPXGXSXFRTPLGFXXKXGXP-LXXLSGKPVR 852
P D GPPP+ P + PPG P G P G G + L G P
Sbjct: 137 PGRDGALLPGPPPKPPCQKCPPGPPGPAGPPGPKGLPGPQGDAGTSGQDGVPGLPGPPGP 196
Query: 853 FXKXXAPRL-GFPHPXG--GXXXPXPKXGPXXXKXPP 954
AP + G P G G GP PP
Sbjct: 197 SGPQGAPGVPGEKGPTGEPGKVINGAPPGPPGPPGPP 233
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 31.9 bits (69), Expect = 0.73
Identities = 23/77 (29%), Positives = 25/77 (32%), Gaps = 5/77 (6%)
Frame = +1
Query: 706 PPPEGPXXQTXRSPPGXGPPXGXSXFRTPLGFXXKXGXPLXXLSG-----KPVRFXKXXA 870
PPP P PPG GPP P+GF P G P F +
Sbjct: 708 PPPGIPGYPPAPPPPGVGPPPPQGI--PPMGFDPNKPPPPMFQQGFNAGAPPPPFGRGAG 765
Query: 871 PRLGFPHPXGGXXXPXP 921
P FP P G P
Sbjct: 766 PMSSFPPPPRGGMHHMP 782
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.9 bits (64), Expect = 2.9
Identities = 28/99 (28%), Positives = 33/99 (33%), Gaps = 9/99 (9%)
Frame = +3
Query: 630 PLPGVXHRLXPPXX----PPXXRXSXQKGPTPGGA*XXNXAFPPWXGSPPGXLXXPDPP- 794
P PG+ R PP PP + P P G PP PPG P PP
Sbjct: 279 PTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPP 338
Query: 795 ---RFXPEXRXPPFXPFXXTXAVFXXXGPPFR-XSPPXG 899
R+ PP + PP R +PP G
Sbjct: 339 PGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSG 377
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.9 bits (64), Expect = 2.9
Identities = 28/99 (28%), Positives = 33/99 (33%), Gaps = 9/99 (9%)
Frame = +3
Query: 630 PLPGVXHRLXPPXX----PPXXRXSXQKGPTPGGA*XXNXAFPPWXGSPPGXLXXPDPP- 794
P PG+ R PP PP + P P G PP PPG P PP
Sbjct: 289 PTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPP 348
Query: 795 ---RFXPEXRXPPFXPFXXTXAVFXXXGPPFR-XSPPXG 899
R+ PP + PP R +PP G
Sbjct: 349 PGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSG 387
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 29.5 bits (63), Expect = 3.9
Identities = 24/93 (25%), Positives = 28/93 (30%)
Frame = +1
Query: 652 GSXPPXDXPXIDXQXKRGPPPEGPXXQTXRSPPGXGPPXGXSXFRTPLGFXXKXGXPLXX 831
G+ P P P P R PPG P G + G G P
Sbjct: 137 GAPGPAGPPGAPGPKGNNGQPGAPAQSGGRGPPGPRGPAGDAGSPGQPGHPGSPGNP--G 194
Query: 832 LSGKPVRFXKXXAPRLGFPHPXGGXXXPXPKXG 930
G+ R + R G P P GG P G
Sbjct: 195 RGGQRSRGLPGPSGRPGPPGPAGGPGQPGHSGG 227
>U52002-6|AAB37732.1| 142|Caenorhabditis elegans Hypothetical
protein F08B4.7 protein.
Length = 142
Score = 29.1 bits (62), Expect = 5.1
Identities = 18/71 (25%), Positives = 23/71 (32%)
Frame = +3
Query: 594 KGLAKRRDX*KGPLPGVXHRLXPPXXPPXXRXSXQKGPTPGGA*XXNXAFPPWXGSPPGX 773
+G R P+P V H P + + P PG PP+ G P G
Sbjct: 63 QGAVPRTTMGMAPVPPVGHHPMMGGPPGMPMMAPRPFPGPGVGFPGAPGMPPFPGGPMGM 122
Query: 774 LXXPDPPRFXP 806
P P P
Sbjct: 123 AGPPGMPPMMP 133
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 28.7 bits (61), Expect = 6.8
Identities = 22/77 (28%), Positives = 24/77 (31%)
Frame = +3
Query: 660 PPXXPPXXRXSXQKGPTPGGA*XXNXAFPPWXGSPPGXLXXPDPPRFXPEXRXPPFXPFX 839
PP P K P + + P PPG P PP R PP P
Sbjct: 209 PPSPGPVDPSEDPKPSEPPSPGPVDPSDEPSPSDPPGPPGPPGPP-----TRRPPGPPGP 263
Query: 840 XTXAVFXXXGPPFRXSP 890
T GPP R P
Sbjct: 264 PTRRPPGPPGPPTRRPP 280
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/37 (32%), Positives = 13/37 (35%)
Frame = +1
Query: 661 PPXDXPXIDXQXKRGPPPEGPXXQTXRSPPGXGPPXG 771
PP P + PPP P PP PP G
Sbjct: 561 PPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPPPPPPG 597
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.141 0.460
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,816,798
Number of Sequences: 27780
Number of extensions: 247539
Number of successful extensions: 461
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2584172786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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