Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_P18
(914 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 34 0.032
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 31 0.23
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.30
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 30 0.53
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.53
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.8
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 6.5
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 26 8.6
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.9 bits (74), Expect = 0.032
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +2
Query: 794 PXGSPPGXPPXXPPXGPPPXXXSAXTPPXXPPGGXGGXP 910
P PP PP PP PP A P PP P
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
Score = 28.7 bits (61), Expect = 1.2
Identities = 25/83 (30%), Positives = 27/83 (32%), Gaps = 7/83 (8%)
Frame = -1
Query: 638 PGXPPVLGXXXFPPXGGXXPXPP--PPXPGXXXXXXXXXXGAPKXPPXXPGG---GGXFX 474
P PP+ PP G PP PP P K P P
Sbjct: 251 PAPPPIP-----PPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALA 305
Query: 473 AXKX--PPPPPRXRXXKGXPXGG 411
A K PPPPP R +G P G
Sbjct: 306 ANKKRPPPPPPPSRRNRGKPPIG 328
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = +2
Query: 794 PXGSPPGXPPXXPPXGPPPXXXSAXTPPXXPPGGXGGXP 910
P +PP PP PP PP PP P G P
Sbjct: 416 PVPTPPSLPPSAPPSLPP------SAPPSLPMGAPAAPP 448
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/51 (27%), Positives = 15/51 (29%)
Frame = -1
Query: 599 PXGGXXPXPPPPXPGXXXXXXXXXXGAPKXPPXXPGGGGXFXAXKXPPPPP 447
P P PP P AP PP P G + PP P
Sbjct: 224 PTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRP 274
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +2
Query: 794 PXGSPPGXPPXXPPXGPPPXXXSAXTPPXXPP 889
P P PP PPP + +PP PP
Sbjct: 241 PPERVPSLSAPAPPPIPPPSNGTVSSPPNSPP 272
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 830 PPXGPPPXXXSAXTPPXXPPGGXGGXPP 913
PP PPP +A + P PP G PP
Sbjct: 337 PPPPPPPRSNAAGSIP-LPPQGRSAPPP 363
Score = 26.2 bits (55), Expect = 6.5
Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Frame = +2
Query: 803 SPPGXPPXXPPXGPPP--XXXSAXTPPXXPPGGXG 901
S P PP P PP SA PP PP G
Sbjct: 228 SAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNG 262
Score = 25.8 bits (54), Expect = 8.6
Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Frame = -1
Query: 638 PGXPP---VLGXXXFPPXGGXXPXPPPP 564
P PP G PP G P PPPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 31.1 bits (67), Expect = 0.23
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +2
Query: 806 PPGXPPXXPPXGPPPXXXSAXTPPXXPPGG 895
PP P P GPP ++ PP PP G
Sbjct: 1883 PPPPPMALPKAGPPSAAPTSALPPAGPPAG 1912
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.7 bits (66), Expect = 0.30
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +2
Query: 806 PPGXPPXXPPXGPPPXXXSAXTPPXXPPGG 895
PPG PP P PPP PP PP G
Sbjct: 5 PPGNPP---PPPPPPGFEPPSQPPPPPPPG 31
Score = 26.2 bits (55), Expect = 6.5
Identities = 11/20 (55%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Frame = +2
Query: 794 PXGSPPGX-PPXXPPXGPPP 850
P PPG PP PP PPP
Sbjct: 11 PPPPPPGFEPPSQPPPPPPP 30
Score = 22.6 bits (46), Expect(3) = 0.38
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -1
Query: 581 PXPPPPXPG 555
P PPPP PG
Sbjct: 9 PPPPPPPPG 17
Score = 22.2 bits (45), Expect(3) = 0.38
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = -1
Query: 509 PPXXPGGGGXFXAXKXPPPPP 447
PP P G + PPPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
Score = 21.8 bits (44), Expect(3) = 0.38
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = -1
Query: 599 PXGGXXPXPPPP 564
P G P PPPP
Sbjct: 5 PPGNPPPPPPPP 16
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 29.9 bits (64), Expect = 0.53
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 870 VXAEXXXGGGPXGGXXGGXPGGDPXG 793
+ A+ GG GG GG PGG P G
Sbjct: 604 IMAKIYQAGGAPGGAPGGMPGGAPGG 629
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -3
Query: 846 GGPXGGXXGGXPGGDPXG 793
GG GG GG PGG P G
Sbjct: 616 GGAPGGMPGGAPGGAPGG 633
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.53
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +2
Query: 809 PGXPPXXPPXGPPPXXXSAXTPPXXPPGGXGGXPP 913
P P P PP PP PPG G PP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Frame = +2
Query: 794 PXGSPPGXP--PXXPPXGPPPXXXSAXTPPXXPP 889
P PP P PP PPP A PP PP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 27.5 bits (58), Expect = 2.8
Identities = 20/74 (27%), Positives = 22/74 (29%)
Frame = -1
Query: 671 PXGGPFVKXFXPGXPPVLGXXXFPPXGGXXPXPPPPXPGXXXXXXXXXXGAPKXPPXXPG 492
P P V P P+ P GG P PPPP P PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP-----GVAGAGPPPPPPPPPAVSA 787
Query: 491 GGGXFXAXKXPPPP 450
GG + A P
Sbjct: 788 GGSRYYAPAPQAEP 801
Score = 26.6 bits (56), Expect = 4.9
Identities = 17/53 (32%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Frame = -1
Query: 602 PPXGGXXPXPPP-PXPGXXXXXXXXXXGAPKXPPXXPGGGGXFXAXKXPPPPP 447
PP P P P P P P PP G G PPPPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAG----PPPPPPPPP 783
Score = 25.8 bits (54), Expect = 8.6
Identities = 13/53 (24%), Positives = 15/53 (28%)
Frame = -1
Query: 602 PPXGGXXPXPPPPXPGXXXXXXXXXXGAPKXPPXXPGGGGXFXAXKXPPPPPR 444
PP PPPP P P P GG + P P+
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEPK 804
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Frame = +2
Query: 806 PPGXPPXX--PPXGPPPXXXSAXTPPXXPPG 892
PP PP PP PPP ++ P PG
Sbjct: 1717 PPSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747
Score = 27.1 bits (57), Expect = 3.7
Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 7/47 (14%)
Frame = +2
Query: 794 PXGSPP-----GXPPXXPPXGPPPXXXSAXTPPXXP--PGGXGGXPP 913
P +PP PP PPP S PP P P G PP
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 2.8
Identities = 20/71 (28%), Positives = 21/71 (29%), Gaps = 1/71 (1%)
Frame = -1
Query: 629 PPV-LGXXXFPPXGGXXPXPPPPXPGXXXXXXXXXXGAPKXPPXXPGGGGXFXAXKXPPP 453
PPV L PP PP P P GAP PP P + P
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSG 1081
Query: 452 PPRXRXXKGXP 420
P G P
Sbjct: 1082 APPVPAPSGIP 1092
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Frame = +2
Query: 812 GXPPXXPP-XGPPPXXXSAXTPPXXPP 889
G PP PP PP S PP PP
Sbjct: 1187 GVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Frame = +2
Query: 794 PXGSPPGXPPXXPP--XGPPPXXXSAXTPPXXPPGGXGGXPP 913
P +P G PP P PP S+ PP P G PP
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPA--AGVPP 1190
Score = 25.8 bits (54), Expect = 8.6
Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Frame = +2
Query: 803 SPPGXPPXXPPXG-PPPXXXSAXTPPXXPP 889
+P G PP P G PP S PP P
Sbjct: 1078 APSGAPPVPAPSGIPPVPKPSVAAPPVPKP 1107
Score = 25.8 bits (54), Expect = 8.6
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 7/46 (15%)
Frame = +2
Query: 794 PXGSPP-----GXPPXXPP--XGPPPXXXSAXTPPXXPPGGXGGXP 910
P G+PP G PP P PP S PP P G P
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVP 1124
Score = 25.8 bits (54), Expect = 8.6
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 7/46 (15%)
Frame = +2
Query: 794 PXGSPP------GXPPXXPPXGPPPXXX-SAXTPPXXPPGGXGGXP 910
P G+PP PP P G PP S PP P G P
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVP 1162
Score = 25.8 bits (54), Expect = 8.6
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Frame = +2
Query: 794 PXGSPP------GXPPXXPPXGPPP-XXXSAXTPPXXPPGGXGGXPP 913
P G+PP PP P G PP S PP P G PP
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPS--SGIPP 1180
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.2 bits (55), Expect = 6.5
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +2
Query: 803 SPPGXPPXXPPXGPPPXXXSAXTPPXXPPG 892
+PPG P P P + PP PPG
Sbjct: 499 APPGVPLPPIPGAPGMPNLNMSQPPMVPPG 528
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 25.8 bits (54), Expect = 8.6
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 849 GGGPXGGXXGGXPGGDPXG 793
GGGP G GG G DP G
Sbjct: 84 GGGPGEGFPGGGFGFDPFG 102
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,839,268
Number of Sequences: 5004
Number of extensions: 24497
Number of successful extensions: 166
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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