Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_P18
         (914 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.55 
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   3.9  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   5.1  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   5.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.55
 Identities = 14/41 (34%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
 Frame = +2

Query: 794 PXGSPPGXPPXXPPXGPPPXXXSAXTPPXXPP-GGXGGXPP 913
           P    PG  P        P   S   P   PP GG  G PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 25.4 bits (53), Expect = 0.73
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +2

Query: 809 PGXPPXXPPXGPPPXXXSAXTPPXXPPGGXGGXPP 913
           P   P  P  G PP   S   PP  PPG      P
Sbjct: 27  PHQSPQAPQRGSPPNP-SQGPPPGGPPGAPPSQNP 60



 Score = 25.0 bits (52), Expect = 0.96
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 800 GSPPGXPPXXPPXGPP 847
           G PPG PP  PP   P
Sbjct: 45  GPPPGGPPGAPPSQNP 60



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 794 PXGSPPGXPPXXPP 835
           P G PPG PP   P
Sbjct: 47  PPGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 5.1
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = +2

Query: 794 PXGSPPGXPPXXPPXGPPPXXXSAXTPPXXP 886
           P     G PP  P  GPPP       P   P
Sbjct: 31  PQAPQRGSPPN-PSQGPPPGGPPGAPPSQNP 60


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -2

Query: 121 IFCNTRHKLRYGNDNFLKIPNPTIXXVXGFP 29
           ++CN   KL Y  +   +IP P       FP
Sbjct: 99  LYCNNYRKLYYNINYIEQIPIPVPIYCGNFP 129


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -2

Query: 121 IFCNTRHKLRYGNDNFLKIPNPTIXXVXGFP 29
           ++CN   KL Y  +   +IP P       FP
Sbjct: 99  LYCNNYKKLYYNINYIEQIPIPVPIYCGNFP 129


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -2

Query: 121 IFCNTRHKLRYGNDNFLKIPNPTIXXVXGFP 29
           ++CN   KL Y  +   +IP P       FP
Sbjct: 99  LYCNNYKKLYYNINYIEQIPIPVPIYCGNFP 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,001
Number of Sequences: 438
Number of extensions: 5500
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)