Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_P14
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    29   1.2  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    26   6.2  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    26   8.2  

>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 552 PSPKTETMQYIVLFSQRTVHEPSVVLSQ*QEELVCSPAPFFCSIV 418
           P     T    ++++QR  + P  VL    E  VC P+PF   ++
Sbjct: 215 PKEALRTRGLAIVWNQRWKNSPESVLKARSEITVCKPSPFHPQLI 259



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 143 EVKECNDLDEEVIIVICVY*LVNIDSTNLPTWCISEP 253
           E+   NDLDE+VII  C     +        WC+SEP
Sbjct: 441 ELVPSNDLDEQVIINSCKT-FTHKAMVFDVKWCVSEP 476


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 533 QCST*FYSPNGPCTSH 486
           +C T F  P GPCT H
Sbjct: 301 RCGTRFADPRGPCTYH 316


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/56 (19%), Positives = 27/56 (48%)
 Frame = +3

Query: 324 QHNNVNQWTSAVVESCLGQLTKLQKPYKY*PAQYCRRMVQDCIQVLLVIGITLLMA 491
           Q +   +W     E  L +L   ++  K    +  + M+++C ++L + G+  ++A
Sbjct: 719 QRHETEEWNQEAFEKRLKELKNQKRSEKRDADEVTQVMIKECQELLRLFGLPYIVA 774


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,110,202
Number of Sequences: 5004
Number of extensions: 61959
Number of successful extensions: 145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)