Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_P14
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0486 - 18634813-18635168,18635258-18638726                       30   2.8  
06_01_0587 - 4211917-4212021,4212250-4212478,4213426-4213759,421...    29   3.7  
11_01_0782 + 6543906-6544702,6545717-6547850                           29   6.5  
06_03_0726 + 23904350-23904964,23905986-23906021,23906158-239062...    29   6.5  

>07_03_0486 - 18634813-18635168,18635258-18638726
          Length = 1274

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +3

Query: 456 VLLVIGITLLMARARSVGRIKLCTALSQSLG 548
           VLLVI + L+  R R  G +  CTA S SLG
Sbjct: 899 VLLVIVLVLIAVRRRRSGEVN-CTAFSSSLG 928


>06_01_0587 -
           4211917-4212021,4212250-4212478,4213426-4213759,
           4215116-4215186,4215374-4215493,4216353-4216771,
           4216885-4217336,4217434-4217812
          Length = 702

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 308 WRHCLSTQQCQPMDF 352
           W+HC++  QCQ +DF
Sbjct: 455 WQHCIAVAQCQALDF 469


>11_01_0782 + 6543906-6544702,6545717-6547850
          Length = 976

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = +2

Query: 98  LITFNTYYLS*NKIMEVKECNDLDEEVIIVIC 193
           ++ F  Y L   ++++++EC DLD++ +I +C
Sbjct: 554 ILDFKKYQLL--RVLDLEECTDLDDDHLIQVC 583


>06_03_0726 +
           23904350-23904964,23905986-23906021,23906158-23906256,
           23906445-23906627,23907016-23907105,23907187-23907285,
           23907584-23907688,23907786-23907926,23908009-23908296,
           23908536-23908826
          Length = 648

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 106 VQYLLPILKQNNGSQRMQRFGRRSNN 183
           V+ LLP  K+N  S+R  R+ RRSN+
Sbjct: 435 VKELLPTPKKNMNSERQPRYRRRSND 460


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,563,598
Number of Sequences: 37544
Number of extensions: 343776
Number of successful extensions: 616
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)