Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_P13
         (926 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    33   0.075
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   5.0  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 32.7 bits (71), Expect = 0.075
 Identities = 32/130 (24%), Positives = 36/130 (27%), Gaps = 1/130 (0%)
 Frame = +3

Query: 522  PXAPPPSTXXTXXDXQXXXRXNPXXTIXIPXVXPXXTPPXXPXRSPPXXPXPXXXSXXSP 701
            P  P PS               P  ++  P V      P  P  S    P P   S   P
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180

Query: 702  XPXNKWXLXPXXXHPXKXPXXPXXSXXNPX*XXXXRTPPXTXXPXXXTGYPXPRSPT-XX 878
             P     + P    P + P  P  S   P        PP    P    G P    PT   
Sbjct: 1181 VPKPAAGVPPVPP-PSEAPPVPKPSVGVPPVPPPSTAPP---VPTPSAGLPPVPVPTAKA 1236

Query: 879  KPXPXPQXXA 908
             P P P   A
Sbjct: 1237 PPVPAPSSEA 1246


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/56 (26%), Positives = 16/56 (28%)
 Frame = +3

Query: 741  HPXKXPXXPXXSXXNPX*XXXXRTPPXTXXPXXXTGYPXPRSPTXXKPXPXPQXXA 908
            HP   P     S   P        PP    P   +  P P  P    P P P   A
Sbjct: 1685 HPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSA 1740


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,692,075
Number of Sequences: 5004
Number of extensions: 19136
Number of successful extensions: 40
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)