Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_P13
(926 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 33 0.29
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.67
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.67
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical pr... 29 4.7
AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical... 29 4.7
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 33.1 bits (72), Expect = 0.29
Identities = 19/59 (32%), Positives = 20/59 (33%)
Frame = +3
Query: 495 KKRXXAGXXPXAPPPSTXXTXXDXQXXXRXNPXXTIXIPXVXPXXTPPXXPXRSPPXXP 671
K R P PPP T R P T P P TPP R+PP P
Sbjct: 130 KSRAGGSSPPPPPPPRVPRTPPPRSPPPR-RPPMTPPSPQRRPPRTPPSPEPRNPPRTP 187
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/49 (28%), Positives = 15/49 (30%)
Frame = +3
Query: 621 PXXTPPXXPXRSPPXXPXPXXXSXXSPXPXNKWXLXPXXXHPXKXPXXP 767
P PP P PP P P P P + P P P P
Sbjct: 139 PPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTP 187
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.9 bits (69), Expect = 0.67
Identities = 25/96 (26%), Positives = 27/96 (28%)
Frame = +3
Query: 609 PXVXPXXTPPXXPXRSPPXXPXPXXXSXXSPXPXNKWXLXPXXXHPXKXPXXPXXSXXNP 788
P V P PP PP P P P P + P P + P P P
Sbjct: 261 PPVPPP--PPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPP 318
Query: 789 X*XXXXRTPPXTXXPXXXTGYPXPRSPTXXKPXPXP 896
PP P G P P P P P
Sbjct: 319 P------PPPSRFGPPGMGGMPPPPPPGMRYPGGMP 348
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.9 bits (69), Expect = 0.67
Identities = 25/96 (26%), Positives = 27/96 (28%)
Frame = +3
Query: 609 PXVXPXXTPPXXPXRSPPXXPXPXXXSXXSPXPXNKWXLXPXXXHPXKXPXXPXXSXXNP 788
P V P PP PP P P P P + P P + P P P
Sbjct: 271 PPVPPP--PPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPP 328
Query: 789 X*XXXXRTPPXTXXPXXXTGYPXPRSPTXXKPXPXP 896
PP P G P P P P P
Sbjct: 329 P------PPPSRFGPPGMGGMPPPPPPGMRYPGGMP 358
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 30.3 bits (65), Expect = 2.0
Identities = 26/100 (26%), Positives = 28/100 (28%), Gaps = 4/100 (4%)
Frame = +3
Query: 609 PXVXPXXTPPXXPXRSPPXXPXPXXXSXXSPXPXNKWXLXPXXXHPXKXP---XXPXXSX 779
P V P PP P SP P P P P P P P
Sbjct: 82 PYVPPAPLPPPPPPASPCCGPSPVPAPCCPPPPAPAAPCCPPPPPPTPSPLVCCKQAPVP 141
Query: 780 XNPX*XXXXRT-PPXTXXPXXXTGYPXPRSPTXXKPXPXP 896
NP PP P P P +P +P P P
Sbjct: 142 ENPCCQIVAAAMPPPPSAPACCVAAPVPTNP-CCQPAPRP 180
>Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical
protein F25H8.5c protein.
Length = 732
Score = 29.1 bits (62), Expect = 4.7
Identities = 23/96 (23%), Positives = 26/96 (27%), Gaps = 3/96 (3%)
Frame = +3
Query: 621 PXXTPPXXPXRS---PPXXPXPXXXSXXSPXPXNKWXLXPXXXHPXKXPXXPXXSXXNPX 791
P TP P R+ PP P P P P P P P +P
Sbjct: 88 PQPTPGPPPPRNNCLPPPGPPPPCQQYQQPQPPPCQRPQPPQPQPQPYPQRTGGCLPSPR 147
Query: 792 *XXXXRTPPXTXXPXXXTGYPXPRSPTXXKPXPXPQ 899
PP P T +P P PQ
Sbjct: 148 GYENQPQPPQPQQQQYPQPQPQRGGCTYSQPQPQPQ 183
>Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical
protein F25H8.5b protein.
Length = 369
Score = 29.1 bits (62), Expect = 4.7
Identities = 23/96 (23%), Positives = 26/96 (27%), Gaps = 3/96 (3%)
Frame = +3
Query: 621 PXXTPPXXPXRS---PPXXPXPXXXSXXSPXPXNKWXLXPXXXHPXKXPXXPXXSXXNPX 791
P TP P R+ PP P P P P P P P +P
Sbjct: 88 PQPTPGPPPPRNNCLPPPGPPPPCQQYQQPQPPPCQRPQPPQPQPQPYPQRTGGCLPSPR 147
Query: 792 *XXXXRTPPXTXXPXXXTGYPXPRSPTXXKPXPXPQ 899
PP P T +P P PQ
Sbjct: 148 GYENQPQPPQPQQQQYPQPQPQRGGCTYSQPQPQPQ 183
>Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical
protein F25H8.5a protein.
Length = 780
Score = 29.1 bits (62), Expect = 4.7
Identities = 23/96 (23%), Positives = 26/96 (27%), Gaps = 3/96 (3%)
Frame = +3
Query: 621 PXXTPPXXPXRS---PPXXPXPXXXSXXSPXPXNKWXLXPXXXHPXKXPXXPXXSXXNPX 791
P TP P R+ PP P P P P P P P +P
Sbjct: 88 PQPTPGPPPPRNNCLPPPGPPPPCQQYQQPQPPPCQRPQPPQPQPQPYPQRTGGCLPSPR 147
Query: 792 *XXXXRTPPXTXXPXXXTGYPXPRSPTXXKPXPXPQ 899
PP P T +P P PQ
Sbjct: 148 GYENQPQPPQPQQQQYPQPQPQRGGCTYSQPQPQPQ 183
>AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical
protein Y22D7AR.1 protein.
Length = 350
Score = 29.1 bits (62), Expect = 4.7
Identities = 23/100 (23%), Positives = 26/100 (26%), Gaps = 3/100 (3%)
Frame = +3
Query: 609 PXVXPXXTPPXXPXRSPPXXPXPXXXSXXSPXPXNKWXLXP---XXXHPXKXPXXPXXSX 779
P P P P P P P P P K P P P
Sbjct: 223 PKPKPKPKPKPNPNPKPEPKPKPKPKPKPEPKPKTKLKSEPKPKPKLKPKPKPNPKPEPN 282
Query: 780 XNPX*XXXXRTPPXTXXPXXXTGYPXPRSPTXXKPXPXPQ 899
P + P + P PRS KP P P+
Sbjct: 283 PMPELKPKPKHKPNSRPKPNPRPKPKPRSKPNPKPKPRPK 322
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,096,134
Number of Sequences: 27780
Number of extensions: 138461
Number of successful extensions: 504
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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