Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_P11
(900 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch... 226 3e-60
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.90
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual 28 2.1
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 27 2.7
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 6.3
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 8.4
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 26 8.4
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |... 26 8.4
>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 382
Score = 226 bits (553), Expect = 3e-60
Identities = 101/151 (66%), Positives = 127/151 (84%)
Frame = +2
Query: 200 FLFTSESXGEGHPDKMCDQISDAILDAHLNQDPDAXFACETITKTGMVLLCGEITSKANV 379
FLFTSES GEGHPDK+CDQISDAILDA L DP + ACET +KTGMV++ GEIT+++ +
Sbjct: 5 FLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASKTGMVMVFGEITTRSQI 64
Query: 380 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDQGL 559
DYQKV+R T+K IGYDDS KGFDYKTC+V++A++QQSP+IA G+H + EE+GAGDQG+
Sbjct: 65 DYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQGLHYEKALEELGAGDQGI 124
Query: 560 MFGYATDETEECMPLTVVLAHKLNQKIAELR 652
MFGYATDET E +PLT++LAHKLN ++ R
Sbjct: 125 MFGYATDETPEKLPLTILLAHKLNAAMSVAR 155
Score = 50.4 bits (115), Expect = 3e-07
Identities = 22/38 (57%), Positives = 27/38 (71%)
Frame = +3
Query: 654 RNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVS 767
R+G W RPD+KTQVT EY GA +P+RV T+VVS
Sbjct: 156 RDGSLPWLRPDTKTQVTIEYEEENGAVIPRRVDTIVVS 193
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.1 bits (62), Expect = 0.90
Identities = 39/144 (27%), Positives = 63/144 (43%)
Frame = -1
Query: 615 STTVNGMHSSVSSVA*PNIKPWSPAPTSSSFLFSCTPAAMFGDCWSSASITLHVL*SKPL 436
S++ + SVSS + +P TSSS+L S + + SS+S TL S L
Sbjct: 179 SSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLT---SSSL 235
Query: 435 DESS*PICLTVSRTTF**STLALDVISPHKSTIPVLVMVSHAKXASGS*FRCASRIASLI 256
SS P + S +T S + S S+ ++S + +S S +S I+S
Sbjct: 236 STSSIPSTSSSSSSTS-SSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISS-- 292
Query: 255 WSHILSG*PSPXDSDVNKNTDPSS 184
S S P+ S ++ ++ SS
Sbjct: 293 -SSSSSSSPTSTSSTISSSSSSSS 315
>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 533
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +2
Query: 587 EECMPLTVVLAHKLNQKIAELRAKWRILVGKTRFKNTGYLR 709
E +PLT + H+ N K ++ A W++ + ++N YL+
Sbjct: 385 EPILPLTEWIMHQPNVKPHDITAVWKLTAARDEYRNR-YLK 424
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 755 SMNSLWDCCTTSKYIFASNLCF*IWSCPP 669
S +SL D TT ++IF+ NL +W P
Sbjct: 244 SRDSLSDSMTTPEFIFSHNLVLQLWKYAP 272
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 256 LVAHFVWMTLAXRFRCEQKY*SIFHII 176
L+ HFVW + CE+K+ S H++
Sbjct: 394 LLLHFVWKSALICVLCERKFQSWGHVV 420
>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 282
Score = 25.8 bits (54), Expect = 8.4
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -1
Query: 672 TKILHFALSSAIF*LSLCASTTVNGMHSSVSSVA*PNIKPWSPAPTSSSFLFSCTPAAM 496
+KI F +F S+C TT++ + + IK TS+S + SCTP A+
Sbjct: 134 SKIEIFDAQDELFDRSIC--TTIDDSTGKLLNAEETPIKTGDLHSTSASSVISCTPPAI 190
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -3
Query: 472 EHHTACLVIKAFGRIIITNMFDRFAHNFLIIHVSFGCDFATQ 347
EH+ C+ + G ++++ DR + I +S C F T+
Sbjct: 101 EHNIPCITFNSSGTLLLSGSIDRSLQIWDITSLSCLCKFYTK 142
>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 266
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 368 KANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQ 487
+ N DY K+ E VK G D+ K C ++ L Q+
Sbjct: 106 EVNEDYAKIAYELVKLAGLDEIVTIMIGKACDSLVELQQK 145
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,595,145
Number of Sequences: 5004
Number of extensions: 77915
Number of successful extensions: 242
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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