Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_P11
(900 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0264 + 2030080-2031270 199 2e-51
01_02_0051 - 10655867-10657057 198 6e-51
01_03_0090 - 12347165-12348349 196 3e-50
12_02_0655 + 21588662-21589051 30 2.2
10_06_0022 - 9716537-9716649,9716709-9716826,9716958-9717076,971... 30 2.2
02_05_0924 - 32749682-32750200,32750756-32750959,32751062-327511... 30 2.2
04_03_0847 - 20254736-20254933,20256127-20256201,20257538-202577... 30 2.9
11_06_0738 - 26807046-26807129,26807720-26807957,26809374-268115... 28 8.8
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 28 8.8
>05_01_0264 + 2030080-2031270
Length = 396
Score = 199 bits (486), Expect = 2e-51
Identities = 93/153 (60%), Positives = 119/153 (77%), Gaps = 2/153 (1%)
Frame = +2
Query: 200 FLFTSESXGEGHPDKMCDQISDAILDAHLNQDPDAXFACETITKTGMVLLCGEITSKANV 379
FLFTSES EGHPDK+CDQ+SDA+LDA L +DPD+ ACET TKT MV++ GEIT+KANV
Sbjct: 7 FLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTKTNMVMVFGEITTKANV 66
Query: 380 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEEVGAGDQ 553
DY+K+VRET ++IG+ + G D C V++ ++QQSP+IA GVH + + EE+GAGDQ
Sbjct: 67 DYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQ 126
Query: 554 GLMFGYATDETEECMPLTVVLAHKLNQKIAELR 652
G MFGYATDET E MPL+ VLA KL ++ E+R
Sbjct: 127 GHMFGYATDETPELMPLSHVLATKLGARLTEVR 159
Score = 51.2 bits (117), Expect = 1e-06
Identities = 24/44 (54%), Positives = 28/44 (63%)
Frame = +3
Query: 636 KLQSSGRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVS 767
+L +NG W RPD KTQVT EY GA VP RVHTV++S
Sbjct: 154 RLTEVRKNGTCAWLRPDGKTQVTVEYRNESGARVPVRVHTVLIS 197
>01_02_0051 - 10655867-10657057
Length = 396
Score = 198 bits (482), Expect = 6e-51
Identities = 93/159 (58%), Positives = 121/159 (76%), Gaps = 2/159 (1%)
Frame = +2
Query: 182 MEDGSVFLFTSESXGEGHPDKMCDQISDAILDAHLNQDPDAXFACETITKTGMVLLCGEI 361
M + FLFTSES EGHPDK+CDQISDA+LDA L +DP++ ACET TKT MV++ GEI
Sbjct: 1 MAEVDTFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPESKVACETCTKTNMVMVFGEI 60
Query: 362 TSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEE 535
T+KANVDY+K+VR+T + IG+ + G D + C V++ ++QQSP+IA GVH + + EE
Sbjct: 61 TTKANVDYEKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQGVHGHFTKRPEE 120
Query: 536 VGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKIAELR 652
+GAGDQG MFGYATDET E MPL+ VLA KL ++ E+R
Sbjct: 121 IGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVR 159
Score = 51.2 bits (117), Expect = 1e-06
Identities = 24/44 (54%), Positives = 28/44 (63%)
Frame = +3
Query: 636 KLQSSGRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVS 767
+L +NG W RPD KTQVT EY GA VP RVHTV++S
Sbjct: 154 RLTEVRKNGACAWLRPDGKTQVTVEYQNDNGAMVPLRVHTVLIS 197
>01_03_0090 - 12347165-12348349
Length = 394
Score = 196 bits (477), Expect = 3e-50
Identities = 92/153 (60%), Positives = 116/153 (75%), Gaps = 2/153 (1%)
Frame = +2
Query: 200 FLFTSESXGEGHPDKMCDQISDAILDAHLNQDPDAXFACETITKTGMVLLCGEITSKANV 379
FLFTSES EGHPDK+CDQ+SDA+LDA L QDPD+ ACET TKT MV++ GEIT+KA V
Sbjct: 6 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKATV 65
Query: 380 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEEVGAGDQ 553
DY+K+VR+T + IG+ G D C V++ ++QQSP+IA GVH + + EE+GAGDQ
Sbjct: 66 DYEKIVRDTCRGIGFVSDDVGLDADRCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQ 125
Query: 554 GLMFGYATDETEECMPLTVVLAHKLNQKIAELR 652
G MFGYATDET E MPL+ VLA KL ++ E+R
Sbjct: 126 GHMFGYATDETPELMPLSHVLATKLGARLTEVR 158
Score = 52.4 bits (120), Expect = 5e-07
Identities = 24/44 (54%), Positives = 29/44 (65%)
Frame = +3
Query: 636 KLQSSGRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVS 767
+L +NG W RPD KTQVT EY+ GA VP RVHTV++S
Sbjct: 153 RLTEVRKNGTCAWLRPDGKTQVTVEYLNDAGAMVPVRVHTVLIS 196
>12_02_0655 + 21588662-21589051
Length = 129
Score = 30.3 bits (65), Expect = 2.2
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = +1
Query: 148 WIRENQRTQL*YGRWISIFVHIGIXWRGSSRQNVRPNKRRYSRRAPESGSGR 303
WI QR ++ G W RGS V P +RR SRR P SG R
Sbjct: 27 WIGGRQRPRMWIGDWREE--------RGSVAVGVAPGRRRESRRRPGSGEAR 70
>10_06_0022 -
9716537-9716649,9716709-9716826,9716958-9717076,
9717238-9717476,9717793-9717849,9717933-9718019,
9718185-9718729,9718836-9719102
Length = 514
Score = 30.3 bits (65), Expect = 2.2
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 314 CETITKTGMVLLCGEITSKANVDYQKVVRET--VKHIGYDDSSKGFDYKTCSVM 469
C +I+K GM+L IT + D+ K VR+ KH GY KG +K+ + M
Sbjct: 446 CGSISKVGMLLF---ITLRT--DWGKEVRKPSPYKHFGYHGKRKGLQFKSSNSM 494
>02_05_0924 -
32749682-32750200,32750756-32750959,32751062-32751109,
32751769-32751819,32751907-32752032,32752117-32752257,
32752750-32752971,32753160-32753312,32753536-32753718,
32753964-32754110,32754212-32754319,32754426-32754530,
32754824-32754928,32755243-32755310,32755498-32755576,
32755876-32755935,32756023-32756076,32756168-32756233,
32756701-32756753,32757042-32757096,32757645-32757787,
32758236-32758333,32758436-32758716
Length = 1022
Score = 30.3 bits (65), Expect = 2.2
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = +2
Query: 509 VHENRNDEEVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKIAELRAKWRILVGKTRF 688
++E D EV A D ++ ++T ECM L +AH Q L+AK +
Sbjct: 758 LNEKSFDLEVKAADNRVIQDQLNEKTTECMELQEEVAHLKEQLYQTLQAKDSLSNSIMMQ 817
Query: 689 KNTG 700
KN G
Sbjct: 818 KNAG 821
>04_03_0847 -
20254736-20254933,20256127-20256201,20257538-20257717,
20257802-20257869,20258563-20259125,20259198-20259235
Length = 373
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -3
Query: 730 APPANTYSQVTCVFESGLAHQNSPFRPELCNFLIEFVCKHYSQRHAFFC 584
A P + ++ VF + P E+ +FL+ +H +QRHAF C
Sbjct: 61 ALPPDAFATALVVFLGDYCDRG-PSTREVIDFLLALPSRHPAQRHAFLC 108
>11_06_0738 - 26807046-26807129,26807720-26807957,26809374-26811509,
26812145-26813253
Length = 1188
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +1
Query: 547 RPGLDVRLCNR*DRRMHAVDCSACTQTQSENCRAQGEMENFGGQDQIQKHRLLAN 711
RP +++R D H D + C T+ E CR + E+F +D +K +L N
Sbjct: 1019 RPSVNIRCV---DWTFHDKD-NDCVGTREEECRTPMKQEHFVKEDLSEKSAVLQN 1069
>03_05_0640 -
26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 28.3 bits (60), Expect = 8.8
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +2
Query: 185 EDGSVFLFTSESXGEGHPDKM---CDQISDAILDAHLNQDPDAXFACETITKTGMVLLC 352
+DGS +LFTS+ E HP M D+ S+ IL E I K G L C
Sbjct: 765 QDGSEWLFTSKRTDESHPFTMHVNFDKFSEDILVGDELVIDGGMATFEVIEKVGNDLRC 823
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,637,624
Number of Sequences: 37544
Number of extensions: 522895
Number of successful extensions: 1373
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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