Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_P10
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...    94   3e-20
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...    93   5e-20
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    28   1.5  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    27   2.7  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    27   3.5  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    27   3.5  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    27   4.6  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    26   8.1  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    26   8.1  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    26   8.1  

>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 93.9 bits (223), Expect = 3e-20
 Identities = 45/80 (56%), Positives = 53/80 (66%)
 Frame = +3

Query: 303 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 482
           M RYS  P    K  KARG+ LR HFKN+ E A  I  M L++A  +L NV E K+ +PF
Sbjct: 1   MVRYSASPALETKCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPF 60

Query: 483 RRFNGGVGRCAQAKQFGTTQ 542
           RRFNGGVGR AQ K+FG TQ
Sbjct: 61  RRFNGGVGRTAQGKEFGVTQ 80



 Score = 54.0 bits (124), Expect = 3e-08
 Identities = 22/38 (57%), Positives = 30/38 (78%)
 Frame = +1

Query: 547 RWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQV 660
           RWP KS +F   LL+NAE+NA+ K LD+D+L+I H+QV
Sbjct: 82  RWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQV 119


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score = 93.1 bits (221), Expect = 5e-20
 Identities = 45/80 (56%), Positives = 53/80 (66%)
 Frame = +3

Query: 303 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 482
           M RYS  P    K  KARG+ LR HFKN+ E A  I  M L++A  +L NV E K+ +PF
Sbjct: 1   MVRYSAAPALETKCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPF 60

Query: 483 RRFNGGVGRCAQAKQFGTTQ 542
           RRFNGGVGR AQ K+FG TQ
Sbjct: 61  RRFNGGVGRTAQGKEFGVTQ 80



 Score = 53.6 bits (123), Expect = 4e-08
 Identities = 22/38 (57%), Positives = 29/38 (76%)
 Frame = +1

Query: 547 RWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQV 660
           RWP KS  F   LL+NAE+NA+ K LD+D+L+I H+QV
Sbjct: 82  RWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQV 119


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 540 VLCQTALLEHSDQRRR*SDGMEYTLSFR 457
           ++C TA+L+H D  RR   G+ + L FR
Sbjct: 846 IVCNTAVLDHWDITRRIEYGIAHILCFR 873


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 363 NLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEK-KECI 476
           NLRV  K T ++ +++   P  +  RYLK ++E  K+C+
Sbjct: 102 NLRVSKKKTSKSDVSMAGFPFFKLDRYLKILVEDLKKCV 140


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 535 QHRXRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVI 645
           +H   WP    EF+ + +++AE N+  +  D  +L+I
Sbjct: 4   EHHSPWPDSLKEFIGRCIQDAEENSQPELEDEVKLLI 40


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 779 IPTHLYYKYNACKLTNKI*IITLLVAFTILCSDNFGFKQH 660
           I   L YKY+ CKL+  + I+T  + +  + + NF  +Q+
Sbjct: 55  IEKSLPYKYDNCKLSICVPIVTTCIPYHSVENLNFNIRQN 94


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +1

Query: 517 KQSSLAQHRXRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHI 654
           K  S +QH+   PK SA  LL +LR+      N TL++  +  D I
Sbjct: 151 KLGSTSQHQIATPKSSAS-LLNILRSLHDEQKN-TLNISSVKQDRI 194


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +3

Query: 258 LASGT*KPLCVSERIMGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMP 422
           +A G    L VS+R+         NP   C  R  N     KN  +  M+I+K+P
Sbjct: 182 MARGAYAHLTVSKRMKDVLQTWGMNPCYVCYDRPPNHFTPIKNEQKKQMSIKKIP 236


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 388 HMRPLWQSGRCRSVVL 435
           HMR LW  G+ RS VL
Sbjct: 9   HMRKLWSLGKVRSTVL 24


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 401 YGNQEDAAPSCCSLPQKRDRKERVYSIPSLQRRR 502
           Y N +   PS  + P++RD  E  Y+     RR+
Sbjct: 361 YSNLDTPLPSGATTPRRRDSMEPTYASNEAHRRQ 394


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,243,780
Number of Sequences: 5004
Number of extensions: 64269
Number of successful extensions: 142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)