Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_P10
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   2.8  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   4.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   6.5  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -1

Query: 233 DTMPFHRKN*INTETARIHSRY 168
           + MP++ K+  NTE +R+ ++Y
Sbjct: 184 EVMPYYLKSENNTELSRVGTKY 205


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 605 FDSAFLNNCKRNSADFLGQRXLCC 534
           F+  FLN+  ++  DF+ +   CC
Sbjct: 123 FNGYFLNSESKDFIDFIQKNLQCC 146


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = +1

Query: 673 PKLSEHKIVNATNKVIIHILFVSLQALY 756
           PK+ +  I++  +++I  + F+   A+Y
Sbjct: 456 PKIKDVNIIDKYSRIIFPVSFMLFNAIY 483


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,417
Number of Sequences: 438
Number of extensions: 4627
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)