Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_P08
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    27   2.8  
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar...    26   6.5  
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   6.5  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    26   8.6  

>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 19/84 (22%), Positives = 40/84 (47%)
 Frame = +3

Query: 462  NVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEV 641
            +++ + +A + K  +    + Q     A ++S N  +T  K APK  +  D+ +  + +V
Sbjct: 815  SIQSDVSAPKAKEVSEKPVSHQAKPSNASQLSRNTDDTQAKEAPKEASIPDNASTASTKV 874

Query: 642  IKKIQEAANAXQ*AVDIELSHFNK 713
                    +A + +V  EL+H +K
Sbjct: 875  SNDSHLKPDADKKSVSSELTHASK 898


>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 459 LNVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAK 626
           LN   +   +REK+Q+  +   + S KL    +  V++ +++   K    Y DFAK
Sbjct: 120 LNNSLSPAEIREKIQSIDKEIEETSSKLESLRNGTVKQISKEAMQKTDKNY-DFAK 174


>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +1

Query: 100 SRTVHHGRQVRSSLRLHRSGPRSDGATRRSR 192
           SRT+HHG +V+  ++ ++ G  S  ++R ++
Sbjct: 129 SRTIHHGNRVQKKIK-NKHGKNSSKSSRAAQ 158


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = +3

Query: 549 KVSSNVQET--NEKLAPKIKAAYD 614
           +V  N++ET   EK A K+KA+YD
Sbjct: 299 EVDLNIEETVLKEKYADKVKASYD 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,139,803
Number of Sequences: 5004
Number of extensions: 30704
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)