Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_P08
(915 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29095-4|CAA82348.3| 444|Caenorhabditis elegans Hypothetical pr... 34 0.12
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ... 32 0.50
AF038606-4|AAB92026.1| 331|Caenorhabditis elegans Hypothetical ... 31 1.1
AF038606-3|AAX55701.1| 393|Caenorhabditis elegans Hypothetical ... 31 1.1
AF038606-2|AAX55700.1| 404|Caenorhabditis elegans Hypothetical ... 31 1.1
AC017117-1|AAF16618.1| 338|Caenorhabditis elegans Hypothetical ... 31 1.1
AB182367-3|BAD23998.1| 331|Caenorhabditis elegans hypothetical ... 31 1.1
AB182367-2|BAD23997.1| 393|Caenorhabditis elegans hypothetical ... 31 1.1
AB182367-1|BAD23996.1| 404|Caenorhabditis elegans hypothetical ... 31 1.1
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/... 31 1.5
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/... 31 1.5
Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z46381-4|CAA86519.2| 604|Caenorhabditis elegans Hypothetical pr... 28 8.1
AF099918-2|AAN63400.1| 219|Caenorhabditis elegans Hypothetical ... 28 8.1
AF099918-1|AAK29840.2| 820|Caenorhabditis elegans Hypothetical ... 28 8.1
AF045646-7|AAK29833.2| 321|Caenorhabditis elegans Hypothetical ... 28 8.1
>Z29095-4|CAA82348.3| 444|Caenorhabditis elegans Hypothetical
protein R10E11.5 protein.
Length = 444
Score = 34.3 bits (75), Expect = 0.12
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +3
Query: 498 LQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKIQEAAN 668
LQ A + VQ + K + SNV E + + I DD K ++ K ++E +
Sbjct: 306 LQKAEEEVVQTIDQTVKNIKSNVNEVKKDVEKNIAEKVDDITKELEKSAKSLEETTD 362
>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
potassium channelsprotein 2 protein.
Length = 1564
Score = 32.3 bits (70), Expect = 0.50
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +3
Query: 471 KNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKK 650
+N + +K VQ + QK+ KK + NVQ+ +K A K AKN Q++ KK
Sbjct: 1265 ENVQKMCKKCAKNVQKCAKNVQKMCKKCAKNVQKMCKKCAKMCKKC----AKNVQKMCKK 1320
>AF038606-4|AAB92026.1| 331|Caenorhabditis elegans Hypothetical
protein C04C3.5a protein.
Length = 331
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +3
Query: 498 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 626
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 110 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 154
>AF038606-3|AAX55701.1| 393|Caenorhabditis elegans Hypothetical
protein C04C3.5c protein.
Length = 393
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +3
Query: 498 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 626
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 172 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 216
>AF038606-2|AAX55700.1| 404|Caenorhabditis elegans Hypothetical
protein C04C3.5b protein.
Length = 404
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +3
Query: 498 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 626
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 183 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 227
>AC017117-1|AAF16618.1| 338|Caenorhabditis elegans Hypothetical
protein F43C11.8 protein.
Length = 338
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = -3
Query: 199 EEVGSVASHHRSLGQSDAGEENYELGGHDVLSERLSAEGDAN 74
EE G+ A H+R L QS+A + L G SE L+++ DAN
Sbjct: 135 EEFGAHAGHNRGLLQSEAAKLRQFLSGKLSRSEDLASKIDAN 176
>AB182367-3|BAD23998.1| 331|Caenorhabditis elegans hypothetical
protein protein.
Length = 331
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +3
Query: 498 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 626
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 110 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 154
>AB182367-2|BAD23997.1| 393|Caenorhabditis elegans hypothetical
protein protein.
Length = 393
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +3
Query: 498 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 626
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 172 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 216
>AB182367-1|BAD23996.1| 404|Caenorhabditis elegans hypothetical
protein protein.
Length = 404
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +3
Query: 498 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 626
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 183 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 227
>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
c protein.
Length = 1510
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = +1
Query: 85 PPHSVSRTVHHGRQVRSSLRLHRSGPR--SDGATR--RSRLLQGHRTPHQGSSIRLXNNS 252
PP S SR + RSSL HR+ R SDG R RS + HR P + + N
Sbjct: 352 PPPSYSREDPYRSTSRSSLSRHRNRSRSPSDGMDRSGRSSSRRTHRRPESRNGSKNANGD 411
Query: 253 LTRSPSQRTHRTSXK 297
+ + + + + K
Sbjct: 412 VVKYETYKMEKRKIK 426
>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
a protein.
Length = 1507
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = +1
Query: 85 PPHSVSRTVHHGRQVRSSLRLHRSGPR--SDGATR--RSRLLQGHRTPHQGSSIRLXNNS 252
PP S SR + RSSL HR+ R SDG R RS + HR P + + N
Sbjct: 352 PPPSYSREDPYRSTSRSSLSRHRNRSRSPSDGMDRSGRSSSRRTHRRPESRNGSKNANGD 411
Query: 253 LTRSPSQRTHRTSXK 297
+ + + + + K
Sbjct: 412 VVKYETYKMEKRKIK 426
>Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical
protein F53F1.4 protein.
Length = 105
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 458 GGPCGAPRPCARCSASTVPKPP 393
GG CG P PC + + V PP
Sbjct: 65 GGGCGGPAPCGGAAPAYVAPPP 86
>Z46381-4|CAA86519.2| 604|Caenorhabditis elegans Hypothetical
protein M01F1.5 protein.
Length = 604
Score = 28.3 bits (60), Expect = 8.1
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -3
Query: 688 STAHXLALAASWIF-LITSWVFFAKSS*AALILGASFSLVSCTFEDTFFANFW 533
STA ++ A +WIF LI S F + S AA G F CT F F+
Sbjct: 504 STAVSVSTACNWIFNLIVSLTFLSLSQ-AATKYGTFFIYCGCTMVALVFVFFF 555
>AF099918-2|AAN63400.1| 219|Caenorhabditis elegans Hypothetical
protein H05C05.1b protein.
Length = 219
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +1
Query: 55 SSVLQSGSHLPPHSVSRTVHH----GRQVRSSLRLHRSGPRSDGATRRSR 192
++ S HLPPH T HH GR R S++ + SG G S+
Sbjct: 11 TTTTSSIDHLPPHPPHPTSHHNSRGGRGGRPSMKPYTSGGGRGGGHHHSQ 60
>AF099918-1|AAK29840.2| 820|Caenorhabditis elegans Hypothetical
protein H05C05.1a protein.
Length = 820
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +1
Query: 55 SSVLQSGSHLPPHSVSRTVHH----GRQVRSSLRLHRSGPRSDGATRRSR 192
++ S HLPPH T HH GR R S++ + SG G S+
Sbjct: 515 TTTTSSIDHLPPHPPHPTSHHNSRGGRGGRPSMKPYTSGGGRGGGHHHSQ 564
>AF045646-7|AAK29833.2| 321|Caenorhabditis elegans Hypothetical
protein F56B3.8 protein.
Length = 321
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 148 HRSGPRSDGATRRSRLLQGHRTPHQGSSIRL 240
HR GP GAT R+L+ R P++ I L
Sbjct: 92 HRRGPADQGATYDERILEIRRDPNRTCHIAL 122
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,213,031
Number of Sequences: 27780
Number of extensions: 189424
Number of successful extensions: 903
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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