Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_P06
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    58   1e-09
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    29   0.87 
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch...    28   1.5  
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    27   2.7  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   4.6  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    26   8.1  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 35/75 (46%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
 Frame = +1

Query: 652 RLAAYNAKKAKKPVLIAKSNIILDVXPWDDETDMAALETSCKVNQH*WPLVGCAKLVP-W 828
           R+A YN KKA KP  + KS + LDV PWDDET M  LE + +  Q    + G +KLVP  
Sbjct: 111 RVAEYNKKKAAKPKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVG 170

Query: 829 LMVS*AXISCVVEND 873
             V+   I+ VVE+D
Sbjct: 171 FGVNKFQINLVVEDD 185


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 388 TELSTKVISLENENKDLKKAIDDLRN 465
           T+  +K+ S E ENK LK +ID+ +N
Sbjct: 388 TDAESKLSSFEQENKSLKGSIDEYQN 413


>SPAC1952.15c |rec24|mug6|meiotic recombination protein
           Rec24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 350

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 135 VFKYNSNLNFGIISMAALLHEKVWLDRNVYNDAEKAYYESLSKV 266
           + + N+N   G+IS A  L   V+L++ ++N    A  E L K+
Sbjct: 207 IMQNNANNGTGVISRAKFLEFYVFLEQLIFNKLSFASVEQLEKL 250


>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 385 NTELSTKVISLENENKDLKKAIDDLRNLVISLQVR 489
           NT+LS K+   ENE +DL +    L++ ++ L+ R
Sbjct: 36  NTQLSIKIRESENEIQDLIQENFTLKSYLVKLEAR 70


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 352 MDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLE 504
           M ++  ++G   T + +    +E+ENK L   + D+RN V  L+  +   E
Sbjct: 247 MQAIDDISGTIET-IKSDCYKVESENKGLINEVMDMRNFVQQLEQELYAFE 296


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 729 LYIQNNIRLCN*HWLFSFLCIICSKTLFLYLXCFS 625
           LY+Q +       W+F    + C+ +LF    CFS
Sbjct: 210 LYLQGDPERVKKAWVFQSRLLFCTASLFEKTACFS 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,974,953
Number of Sequences: 5004
Number of extensions: 52636
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)