Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_P05
         (909 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    25   0.62 
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    24   1.4  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   4.4  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   7.6  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 626 IQGYVPENTGQFVKEDHWSY*AIFISRFSSLILTSASRLMTN 751
           IQ  VP+N     ++    + A  ++  SSL+L +  RLM+N
Sbjct: 118 IQDIVPQNVLDEEEKSSTKHYAALLTERSSLVLRNDFRLMSN 159


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +3

Query: 408 YSLCRHP-SYVGWFYWSV 458
           YS+   P S +GWF+WS+
Sbjct: 558 YSISIRPISTLGWFFWSL 575


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 281 YARQPETSLHPRKEIIFNGPFNPTSDRCNS 192
           Y R P+        + +NG F P   RCN+
Sbjct: 427 YVRDPDDCSIFYYCLAYNGGFVPLEQRCNA 456


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 236 IFNGPFNPTSDRCNSILHTV 177
           IFNG  NP +D    +L  +
Sbjct: 333 IFNGHLNPDNDEVLQVLEDI 352


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,563
Number of Sequences: 336
Number of extensions: 4116
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25341085
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)