Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_P05
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer...    76   6e-15
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    27   2.8  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    27   2.8  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    26   8.5  

>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
           Mam4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 76.2 bits (179), Expect = 6e-15
 Identities = 50/151 (33%), Positives = 76/151 (50%), Gaps = 15/151 (9%)
 Frame = +3

Query: 111 LXFMSVALTNPRTLTIDSYILNHSVQYGVAAVTSWIEW----------AIEYYFFPGMK- 257
           L F   A      L+ DS+ILN+   Y +A +   +E            I    FP    
Sbjct: 51  LEFYITARFQGSQLSWDSFILNNGKAYWLAMLVGLLECLLSGGKSFAKVINCLRFPSFLI 110

Query: 258 ----TCFWLSSIGVIMCIGGEILXXSAMFTARTNFNHTVQFVKRVDHRLVTHGVYSLCRH 425
               + +  S++G  +C+G + L  SAM  A  +F+H V   +  DH LVT G+Y+  RH
Sbjct: 111 NFIFSVYQTSALG-FLCLG-QYLRSSAMVQAGQSFSHIVASKRNKDHLLVTDGIYAYVRH 168

Query: 426 PSYVGWFYWSVGTQFILLNPFCLIIYTLASW 518
           PSYVG+F W++GTQ +L N    ++++L  W
Sbjct: 169 PSYVGFFIWALGTQMLLGNFVSTLLFSLVLW 199



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 15/32 (46%), Positives = 23/32 (71%)
 Frame = +2

Query: 533 ERVYAEELTLLTFFGPAYEVYQSKVSTGLPFI 628
           +R+  EE  L++FFG +YE Y+ KV +G+P I
Sbjct: 204 QRITTEEAYLVSFFGDSYEQYRKKVPSGIPLI 235


>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 384 HRLVTHGVYSLCRHPSYVGWFYWSVGTQFILLNPFCLIIYTLA 512
           HR + +  Y LC  P    WF  ++       NPF  I+  +A
Sbjct: 90  HRTIRYAAYGLCLTPIQFRWFV-ALSNVIQTENPFIAIVLRVA 131


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 210 SWIEWAIEYYFFPGMKTCF-WLSSIGVIMCIGGEILXXSAMFTARTNFN 353
           SW   A+    F  +K  + W   +GV+ CIGG +L   +   +R +++
Sbjct: 242 SWATVAVVILSFIFLKVRYHWSQILGVVACIGGLVLLVVSDVISRGDYS 290


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 123 SVALTNPRTLTIDSYILNHSVQYGVAAVTSWIEWAIEYYFFPGMKTCFWLS 275
           ++A   PR  +I S  + H  +  V AV    EW  + + F G+ T + L+
Sbjct: 434 NMAHMKPRYYSISSSSVVHPDKVHVTAVVDKKEWTDKNHIFYGLTTNYLLA 484


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,260,130
Number of Sequences: 5004
Number of extensions: 65484
Number of successful extensions: 172
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)