Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_P05
         (909 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1058 + 30462417-30462528,30463482-30463725,30463903-304639...    86   3e-17
01_01_0517 + 3803740-3806106,3806226-3806312,3806397-3807035,380...    30   2.9  

>04_04_1058 +
           30462417-30462528,30463482-30463725,30463903-30463957,
           30465237-30465278,30465279-30465353
          Length = 175

 Score = 86.2 bits (204), Expect = 3e-17
 Identities = 42/116 (36%), Positives = 67/116 (57%)
 Frame = +3

Query: 120 MSVALTNPRTLTIDSYILNHSVQYGVAAVTSWIEWAIEYYFFPGMKTCFWLSSIGVIMCI 299
           ++ A    R +T  S ++  S QY +A   + +E   E   FP +K  +++S +G++M I
Sbjct: 24  LAAAFHGRRNVTATSLLI--SKQYVLAMSFAMLEHLTEALLFPELKEYWFVSYVGLVMVI 81

Query: 300 GGEILXXSAMFTARTNFNHTVQFVKRVDHRLVTHGVYSLCRHPSYVGWFYWSVGTQ 467
            GE++   A+ TA  +F H ++      H+L+THGVY L RHP Y G+  W+VGTQ
Sbjct: 82  IGEVIRKLAVVTAGRSFTHVIRIHYEDQHKLITHGVYRLMRHPGYSGFLIWAVGTQ 137


>01_01_0517 + 3803740-3806106,3806226-3806312,3806397-3807035,
            3807118-3807282,3807363-3807657,3807739-3807953,
            3808125-3808430,3808539-3808602,3808735-3808974,
            3809150-3809253
          Length = 1493

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 192  GVAAVTSWIEWAIEYYFFPGMKTCFW 269
            G+ AV S + W +   F P +  CFW
Sbjct: 1059 GIIAVMSQVAWQVFVVFIPVLAACFW 1084


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,448,421
Number of Sequences: 37544
Number of extensions: 401055
Number of successful extensions: 726
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)