Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_P05
         (909 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80450-7|AAB37832.1|  293|Caenorhabditis elegans Hypothetical pr...   143   1e-34
U88175-3|AAB42280.1|  295|Caenorhabditis elegans Hypothetical pr...   124   9e-29

>U80450-7|AAB37832.1|  293|Caenorhabditis elegans Hypothetical
           protein M01E11.1 protein.
          Length = 293

 Score =  143 bits (347), Expect = 1e-34
 Identities = 68/139 (48%), Positives = 84/139 (60%), Gaps = 2/139 (1%)
 Frame = +3

Query: 108 FLXFMSVALTNPRTLTIDSYILNHSVQYGVAAVTSWIEWAIEYYFFPGMKT--CFWLSSI 281
           F  F+  ALTN RTL  DS++LNHSV Y +AA  SWIE+ IE YFFP +K     W+ ++
Sbjct: 116 FTEFVFTALTNRRTLRPDSFLLNHSVGYWLAASISWIEFLIEAYFFPEIKMRGILWIGTL 175

Query: 282 GVIMCIGGEILXXSAMFTARTNFNHTVQFVKRVDHRLVTHGVYSLCRHPSYVGWFYWSVG 461
           G   CI GEI     M  A   F H +   KR DHRLV  G+Y+  RHP Y GWF W+V 
Sbjct: 176 G---CIIGEIFRKVGMVHAGLAFTHRLAMTKRSDHRLVKDGIYAYLRHPGYFGWFLWAVS 232

Query: 462 TQFILLNPFCLIIYTLASW 518
           TQ IL NP C ++Y   +W
Sbjct: 233 TQIILCNPICCVVYAYVTW 251



 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 17/34 (50%), Positives = 24/34 (70%)
 Frame = +2

Query: 536 RVYAEELTLLTFFGPAYEVYQSKVSTGLPFIQGY 637
           R+Y EE  L++FFG +Y  YQ  V  G+PF++GY
Sbjct: 257 RIYDEEKDLISFFGDSYVEYQQNVWCGVPFVRGY 290


>U88175-3|AAB42280.1|  295|Caenorhabditis elegans Hypothetical
           protein F21F3.3 protein.
          Length = 295

 Score =  124 bits (299), Expect = 9e-29
 Identities = 60/139 (43%), Positives = 79/139 (56%), Gaps = 2/139 (1%)
 Frame = +3

Query: 108 FLXFMSVALTNPRTLTIDSYILNHSVQYGVAAVTSWIEWAIEYYFFPGMK--TCFWLSSI 281
           F  F+  ALTN RTL  DS++L HS  Y +AA   WIE+ IE  F+P +K  +  W+ + 
Sbjct: 118 FSEFVFTALTNRRTLGPDSFLLKHSFGYWLAASIGWIEFLIEANFYPEIKMYSVLWIGTF 177

Query: 282 GVIMCIGGEILXXSAMFTARTNFNHTVQFVKRVDHRLVTHGVYSLCRHPSYVGWFYWSVG 461
           G   CI GEI+    M  A   F H +   KR  H L+  G+Y+  RHP Y GWF W+V 
Sbjct: 178 G---CIIGEIVRKVGMVHAGLAFTHLMARTKRSGHTLINTGIYAYMRHPGYFGWFIWAVS 234

Query: 462 TQFILLNPFCLIIYTLASW 518
           TQ +L NP   +IYT  +W
Sbjct: 235 TQIVLCNPISFVIYTFVTW 253



 Score = 38.3 bits (85), Expect = 0.007
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +2

Query: 536 RVYAEELTLLTFFGPAYEVYQSKVSTGLPFIQGY 637
           R+  EE  L++FFG  Y  YQ K  +G+PF +GY
Sbjct: 259 RIEIEEKDLISFFGDDYAEYQRKTWSGVPFARGY 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,987,288
Number of Sequences: 27780
Number of extensions: 368209
Number of successful extensions: 768
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)