Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_P05
         (909 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   5.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   8.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   8.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 78   STPWCCRCSIFLXFMSVALTNPRTLTIDS 164
            S PW CRC  FL  +S  +++     +D+
Sbjct: 923  SNPWSCRCK-FLQELSSWVSDNAHKVVDA 950


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 379 TLFTNCTVWLKLV 341
           T++T C +WL  V
Sbjct: 853 TMYTTCVIWLAFV 865


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 379 TLFTNCTVWLKLV 341
           T++T C +WL  V
Sbjct: 711 TMYTTCIIWLAFV 723


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 379 TLFTNCTVWLKLV 341
           T++T C +WL  V
Sbjct: 801 TMYTTCIIWLAFV 813


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,587
Number of Sequences: 438
Number of extensions: 4524
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)