Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_P04
         (916 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    27   2.8  
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    26   6.5  

>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = +1

Query: 298 EKXKXXKKKGXXXKKKGXXXKKXGGRKXXXKXKKKKKRXXXPXGKNXKKKK 450
           +K K  K  G    K+    KK   ++   K KKK KR         K+K+
Sbjct: 126 KKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKKKSKRLKLDDSHTQKRKR 176


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +1

Query: 307 KXXKKKGXXXKKKGXXXKKXGGRKXXXKXKK-KKKRXXXPXGKNXKKKK 450
           K  KK     +  G   KK    K   K KK K+K      G++ KKKK
Sbjct: 453 KKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSEESEDGESPKKKK 501


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,235,250
Number of Sequences: 5004
Number of extensions: 11255
Number of successful extensions: 29
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)