Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_P03
(909 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10; Culicim... 327 2e-88
UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203; Eukary... 316 4e-85
UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep: ... 316 7e-85
UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, wh... 239 5e-62
UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1; ... 233 6e-60
UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5... 227 4e-58
UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila... 196 5e-49
UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2; T... 189 1e-46
UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba hi... 188 2e-46
UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9; Trypanos... 186 7e-46
UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lambli... 164 3e-39
UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillard... 144 2e-33
UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, wh... 144 4e-33
UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1; Encephal... 122 1e-26
UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S riboso... 121 3e-26
UniRef50_A2A3R7 Cluster: Ribosomal protein S6; n=1; Homo sapiens... 80 9e-14
UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n... 69 1e-10
UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1; ... 63 1e-08
UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila melanogaster|... 63 1e-08
UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1; Thermoc... 63 1e-08
UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 62 2e-08
UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2; Methano... 61 3e-08
UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7; Euryarc... 61 4e-08
UniRef50_Q3LVW0 Cluster: Ribosomal protein S6; n=1; Bigelowiella... 58 2e-07
UniRef50_Q01CM6 Cluster: Chromosome 03 contig 1, DNA sequence; n... 56 9e-07
UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 56 2e-06
UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6; Halobac... 55 2e-06
UniRef50_Q980A6 Cluster: 30S ribosomal protein S6e; n=5; Sulfolo... 54 5e-06
UniRef50_A2BJZ7 Cluster: 30S ribosomal protein S6e; n=2; Desulfu... 52 2e-05
UniRef50_A7IAP8 Cluster: Ribosomal protein S6e; n=2; Candidatus ... 49 2e-04
UniRef50_Q8ZX25 Cluster: 30S ribosomal protein S6e; n=5; Thermop... 48 3e-04
UniRef50_Q9Y9B6 Cluster: 30S ribosomal protein S6e; n=1; Aeropyr... 46 0.001
UniRef50_A0RYX5 Cluster: Ribosomal protein S6E; n=1; Cenarchaeum... 44 0.004
UniRef50_Q978W7 Cluster: 30S ribosomal protein S6e; n=5; Thermop... 44 0.004
UniRef50_Q8PU79 Cluster: 30S ribosomal protein S6e; n=8; Euryarc... 44 0.005
UniRef50_A6C4P7 Cluster: Pseudouridine synthase; n=1; Planctomyc... 41 0.038
UniRef50_A7DQN0 Cluster: Ribosomal protein S6e; n=1; Candidatus ... 40 0.088
UniRef50_Q74MJ5 Cluster: 30S ribosomal protein S6e; n=1; Nanoarc... 39 0.15
UniRef50_A6L045 Cluster: Putative uncharacterized protein; n=1; ... 33 7.6
UniRef50_O86476 Cluster: Clumping factor B precursor; n=31; Stap... 33 7.6
>UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10;
Culicimorpha|Rep: 40S ribosomal protein S6 - Aedes
albopictus (Forest day mosquito)
Length = 349
Score = 327 bits (804), Expect = 2e-88
Identities = 154/196 (78%), Positives = 172/196 (87%)
Frame = +3
Query: 108 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 287
MKLNVS+PATG QK FEV+D+HKLR FY+KRMGAE+ AD LGDEWKGYV ++AGGNDKQG
Sbjct: 1 MKLNVSFPATGAQKTFEVMDDHKLRHFYDKRMGAEITADHLGDEWKGYVFKIAGGNDKQG 60
Query: 288 FPMKQGVLTXFRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 467
FPMKQGVLT RVRLL+ KGHSCYRPRR GERKRKSVRGCIVD NLS LAL++V+KG ++
Sbjct: 61 FPMKQGVLTNTRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDQNLSALALIVVKKGEKD 120
Query: 468 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKI 647
IPGLTD V RRLGPKRAS IRKL+NL+KEDDVR+YVVKR LP K+GK KPR KAPKI
Sbjct: 121 IPGLTDTTVLRRLGPKRASNIRKLYNLTKEDDVRQYVVKRPLPEKDGK---KPRTKAPKI 177
Query: 648 QRLVTPVVLQRXRHRL 695
QRL+TPVVLQR RHRL
Sbjct: 178 QRLITPVVLQRKRHRL 193
>UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203;
Eukaryota|Rep: 40S ribosomal protein S6 - Homo sapiens
(Human)
Length = 249
Score = 316 bits (777), Expect = 4e-85
Identities = 155/196 (79%), Positives = 170/196 (86%)
Frame = +3
Query: 108 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 287
MKLN+S+PATGCQKL EV DE KLR FYEKRM EV AD LG+EWKGYV+R++GGNDKQG
Sbjct: 1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG 60
Query: 288 FPMKQGVLTXFRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 467
FPMKQGVLT RVRLL+SKGHSCYRPRR GERKRKSVRGCIVDANLSVL LVIV+KG ++
Sbjct: 61 FPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKD 120
Query: 468 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKI 647
IPGLTD VPRRLGPKRAS+IRKLFNLSKEDDVR+YVV++ L KEGK KPR KAPKI
Sbjct: 121 IPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPL-NKEGK---KPRTKAPKI 176
Query: 648 QRLVTPVVLQRXRHRL 695
QRLVTP VLQ R R+
Sbjct: 177 QRLVTPRVLQHKRRRI 192
>UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 245
Score = 316 bits (775), Expect = 7e-85
Identities = 147/196 (75%), Positives = 166/196 (84%)
Frame = +3
Query: 108 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 287
MKLN+SYP TGCQKL E+ DE K+R FY+KRM EV + LGDEWKGYV R+ GGNDKQG
Sbjct: 1 MKLNISYPVTGCQKLIEIEDERKVRSFYDKRMAMEVSGECLGDEWKGYVFRITGGNDKQG 60
Query: 288 FPMKQGVLTXFRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 467
FPMKQG++T RVRLL+SKGHSCYRPRR GERKRKSVRGCIVD+ LSVL+LVIV+KG Q+
Sbjct: 61 FPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSQLSVLSLVIVKKGEQD 120
Query: 468 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKI 647
IPGLTD +PRRLGPKR KIRK+FNLSKEDDVR+YV++R LP KEGK K + KAPKI
Sbjct: 121 IPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQYVIRRPLPEKEGK---KAKSKAPKI 177
Query: 648 QRLVTPVVLQRXRHRL 695
QRLVTPVVLQR R RL
Sbjct: 178 QRLVTPVVLQRKRKRL 193
>UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, whole
genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_28,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 315
Score = 239 bits (586), Expect = 5e-62
Identities = 117/194 (60%), Positives = 145/194 (74%), Gaps = 3/194 (1%)
Frame = +3
Query: 108 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 287
MK N+SYP TG QK E+ D+ K IF++KRMG VEAD LG+E+KGYVL++ GGNDKQG
Sbjct: 1 MKFNISYPLTGAQKTVEIDDDKKCSIFFDKRMGQVVEADNLGEEYKGYVLKITGGNDKQG 60
Query: 288 FPMKQGVLTXFRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 467
FPM+QGVL RVR+LM KGH YRPR+DGE KRKS+RGCIV ++ VLAL +V+KGA E
Sbjct: 61 FPMRQGVLFKGRVRILMRKGHKGYRPRKDGEMKRKSIRGCIVGQDIRVLALQVVKKGANE 120
Query: 468 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDD---VRRYVVKRVLPAKEGKENAKPRHKA 638
I GLTD NVPRRLGPKR +K+R+LF K D V++ +++R K+GK+ R KA
Sbjct: 121 IAGLTDQNVPRRLGPKRLTKLRRLFGFKKADGVAIVQKNLIRRTWTTKDGKK----RQKA 176
Query: 639 PKIQRLVTPVVLQR 680
PKIQRLVT L+R
Sbjct: 177 PKIQRLVTESRLRR 190
>UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 293
Score = 233 bits (569), Expect = 6e-60
Identities = 113/196 (57%), Positives = 142/196 (72%), Gaps = 3/196 (1%)
Frame = +3
Query: 108 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 287
MK N+SYP TG QK E+ D+ K IF +K+MG EVE D LGDE+KGYV ++AGGNDK G
Sbjct: 1 MKFNISYPLTGAQKCIEIDDDKKCNIFMDKKMGQEVEGDTLGDEFKGYVFKIAGGNDKDG 60
Query: 288 FPMKQGVLTXFRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 467
FPMKQGV+ RVRLL+S+GHSC+ RR G RKRKSVRGCIV ++ VLAL IV+KG E
Sbjct: 61 FPMKQGVMVRGRVRLLLSEGHSCFTSRRSGFRKRKSVRGCIVGPDMRVLALQIVKKGVAE 120
Query: 468 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDD---VRRYVVKRVLPAKEGKENAKPRHKA 638
I GLT +PR+LGPKRA+ I+KLF L KEDD +++ V++R +GK+ R K
Sbjct: 121 IDGLTTVTLPRKLGPKRANNIKKLFGLKKEDDPILIKKSVIRRTFKTAKGKD----RTKC 176
Query: 639 PKIQRLVTPVVLQRXR 686
PKIQRL+TP + R +
Sbjct: 177 PKIQRLITPERILRKK 192
>UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5;
Plasmodium|Rep: 40S ribosomal protein S6, putative -
Plasmodium vivax
Length = 391
Score = 227 bits (554), Expect = 4e-58
Identities = 115/193 (59%), Positives = 135/193 (69%)
Frame = +3
Query: 108 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 287
MKLN+S P QK E+ DE KL F EKR+G V D +G+E+ GYV R+ GGNDKQG
Sbjct: 42 MKLNISNPLNNVQKSIEIDDEKKLLPFMEKRIGNVVPGDSIGEEFLGYVFRITGGNDKQG 101
Query: 288 FPMKQGVLTXFRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 467
FPM QGVLT RVRLL KG CYRPR+ GE++RKSVRGCIV +LS L L +V+KG E
Sbjct: 102 FPMMQGVLTNNRVRLLFKKGMKCYRPRKKGEKRRKSVRGCIVGQDLSALNLTLVKKGTNE 161
Query: 468 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKI 647
IPGLTD V ++LGPKRA+KIRKLFNL K DDVR+YV+ R + +N K R PKI
Sbjct: 162 IPGLTDKAVGKKLGPKRATKIRKLFNLDKTDDVRKYVIGRAI-----SKNGKNRFIKPKI 216
Query: 648 QRLVTPVVLQRXR 686
QRLVT L R R
Sbjct: 217 QRLVTEKRLLRKR 229
>UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila
melanogaster|Rep: Isoform B of P29327 - Drosophila
melanogaster (Fruit fly)
Length = 200
Score = 196 bits (479), Expect = 5e-49
Identities = 106/179 (59%), Positives = 124/179 (69%)
Frame = +3
Query: 108 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 287
MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG VEAD LGDEWKGY LR+AGGNDKQG
Sbjct: 1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60
Query: 288 FPMKQGVLTXFRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 467
FPMKQGVLT R+RLL K HSC+ PR + RK K+VR V+AN+S L LV+++K
Sbjct: 61 FPMKQGVLTHGRLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS- 118
Query: 468 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPK 644
P RLGP R+S I K++ L +EDD V+P K + + K R A K
Sbjct: 119 ---------PCRLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKKRQNATK 161
>UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2;
Trichomonas vaginalis G3|Rep: Ribosomal protein S6e,
putative - Trichomonas vaginalis G3
Length = 216
Score = 189 bits (460), Expect = 1e-46
Identities = 91/186 (48%), Positives = 128/186 (68%), Gaps = 1/186 (0%)
Frame = +3
Query: 108 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 287
M++ ++YP G Q + ++ D L YEKR+G ++E ++LG ++KGY+ R+ GG DKQG
Sbjct: 1 MRITLAYPENGTQVVVDIDDPAALNALYEKRVGQDIEGEKLGGQFKGYLFRIGGGFDKQG 60
Query: 288 FPMKQGVLTXFRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 467
FPMKQGV+T R+RLL+ G SCYRPR+DGERKRK+VRGCI+ +S L V+++KG +E
Sbjct: 61 FPMKQGVITPRRIRLLLKTGASCYRPRKDGERKRKTVRGCIISDEISALHCVVLQKGEKE 120
Query: 468 IPGLTDGNVPRRLGPKRASKIRKLFNLS-KEDDVRRYVVKRVLPAKEGKENAKPRHKAPK 644
I GLT VPRR GPKRAS +R +F ++ + D + V+KR K GK +PK
Sbjct: 121 IDGLTTTAVPRRFGPKRASTLRAMFGITDSKFDASKLVLKR--EVKPGK------FTSPK 172
Query: 645 IQRLVT 662
+QRL+T
Sbjct: 173 VQRLIT 178
>UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba
histolytica|Rep: Ribosomal protein S6 - Entamoeba
histolytica
Length = 162
Score = 188 bits (458), Expect = 2e-46
Identities = 86/159 (54%), Positives = 119/159 (74%)
Frame = +3
Query: 111 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGF 290
K+NV+YPATG K F+ +E R F +KR+G EV+A LGDE+KGY+L++ GG DK GF
Sbjct: 1 KINVAYPATGRIKKFDFEEEKNYRPFLDKRIGQEVDASSLGDEFKGYILKITGGCDKDGF 60
Query: 291 PMKQGVLTXFRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEI 470
PM GV T RVRLL+ + CY+P R+GER+RK+VRG IV ++SVL ++V+KG EI
Sbjct: 61 PMMTGVATNNRVRLLLDGRNGCYKPLRNGERRRKTVRGAIVAGDISVLNTIVVKKGEGEI 120
Query: 471 PGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR 587
G+T+ +P R GP+RAS RKLFNLS++DDV+++V++R
Sbjct: 121 EGVTNDALPMRAGPQRASHFRKLFNLSQKDDVKKFVIRR 159
>UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9;
Trypanosomatidae|Rep: 40S ribosomal protein S6 -
Leishmania major
Length = 249
Score = 186 bits (453), Expect = 7e-46
Identities = 99/194 (51%), Positives = 132/194 (68%), Gaps = 3/194 (1%)
Frame = +3
Query: 108 MKLNVSYPATGCQKLFEVVDEHKLRI-FYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 284
MKLN++YP G K FE+ DE R+ + R+G EV+ G E+KGY+ R+ GG+DK
Sbjct: 1 MKLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKD 60
Query: 285 GFPMKQGVLTXFRVRLLMSKGHSCYRPRR--DGERKRKSVRGCIVDANLSVLALVIVRKG 458
GFPM GVL RV LL+ +G + R GER+RK+VRGC++ ++++++ + I + G
Sbjct: 61 GFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVG 120
Query: 459 AQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKA 638
Q I G+TD PRRLGPKRASKIRKLFNLS+ +DVR+YVV+R + K GK K R KA
Sbjct: 121 DQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRRV-VKSGK---KDRLKA 176
Query: 639 PKIQRLVTPVVLQR 680
PKIQRL+TP V R
Sbjct: 177 PKIQRLITPRVKAR 190
>UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_64_20707_19961 - Giardia lamblia
ATCC 50803
Length = 248
Score = 164 bits (398), Expect = 3e-39
Identities = 88/189 (46%), Positives = 120/189 (63%), Gaps = 5/189 (2%)
Frame = +3
Query: 111 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGF 290
K+N+S P TG K + D K + + RM +E + LG+E+ G R+ GGND QGF
Sbjct: 8 KVNISNPVTGANKSLMIEDFRKSQTIHGLRMASEFDGAALGEEYAGCTFRITGGNDAQGF 67
Query: 291 PMKQGVLTXFRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEI 470
PM QGVL R RLL+ +G CY RR+GERKRKS+RGCIV +L L++V+V G + +
Sbjct: 68 PMYQGVLKSQRARLLLRQGAKCYLHRRNGERKRKSIRGCIVGPDLHALSVVLVDAGDKTL 127
Query: 471 PGLTDGNVPRRLGPKRASKIRKLFNL--SKEDDVRRYVVKRV---LPAKEGKENAKPRHK 635
PGLTD VP+RL PKRASKIR+LF L +K D + +V + L + +N + + K
Sbjct: 128 PGLTDVVVPKRLVPKRASKIRRLFGLPTTKVDPKDQMLVCELIKELGHEVTLKNGEKKLK 187
Query: 636 APKIQRLVT 662
PK+QR+VT
Sbjct: 188 YPKVQRVVT 196
>UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillardia
theta|Rep: 40S ribosomal protein S6 - Guillardia theta
(Cryptomonas phi)
Length = 209
Score = 144 bits (350), Expect = 2e-33
Identities = 77/198 (38%), Positives = 122/198 (61%), Gaps = 2/198 (1%)
Frame = +3
Query: 108 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 287
MK N++ P+TG Q E+ DE KLRI Y K++ ++++ +G EW + + GG DKQG
Sbjct: 1 MKFNIANPSTGVQHTIEIDDEDKLRILYGKKLTSKIDGKIIGKEWDKSIFIITGGQDKQG 60
Query: 288 FPMKQGVLTXFRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 461
FPMK+G+L+ RV++L+ KG + R + GER RKSVRGCIV +SVL + ++
Sbjct: 61 FPMKEGILSPSRVKILLKKGSTGCRGYKMKKGERCRKSVRGCIVSPEISVLNIKLLTNKN 120
Query: 462 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAP 641
++ +T+ N + L KR+S +RK+ L+K DD+R++ +K AK+ K
Sbjct: 121 DDLL-ITNKNSEKTLTHKRSSNLRKVLCLTKTDDIRKHYIK---IAKDFKNKV------- 169
Query: 642 KIQRLVTPVVLQRXRHRL 695
KIQRL+TP+ +Q+ + +
Sbjct: 170 KIQRLITPIKIQKKKENI 187
>UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_48,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 304
Score = 144 bits (348), Expect = 4e-33
Identities = 82/143 (57%), Positives = 97/143 (67%), Gaps = 2/143 (1%)
Frame = +3
Query: 258 RVAGGNDKQGFPMKQGVLTXFRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLA 437
R GGNDKQG VL RVR+LM KGH YRPR+DGE KRKS+RGCIV ++ VLA
Sbjct: 62 RFTGGNDKQG------VLFKGRVRILMRKGHKGYRPRKDGEMKRKSIRGCIVGQDIRVLA 115
Query: 438 LVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKE-GKE 614
L +V+KGA EI GLTD NVPRRLGPKR +K+R+LF K D RV+ ++E G +
Sbjct: 116 LQVVKKGANEIAGLTDQNVPRRLGPKRLTKLRRLFGFKKAD--------RVISSEEHGPQ 167
Query: 615 N-AKPRHKAPKIQRLVTPVVLQR 680
K R KAPKIQRLVT L+R
Sbjct: 168 RYGKKRQKAPKIQRLVTESRLRR 190
>UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S6 -
Encephalitozoon cuniculi
Length = 203
Score = 122 bits (294), Expect = 1e-26
Identities = 65/170 (38%), Positives = 107/170 (62%), Gaps = 2/170 (1%)
Frame = +3
Query: 150 LFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTXFRVR 329
+FE+ +++R+ Y+K++G + + LG+E++G ++ + GG+D QGFPM G LT RVR
Sbjct: 1 MFEIERRNEVRL-YDKKIGDQFDGGILGEEFEGTIMEITGGDDYQGFPMVSGHLTKKRVR 59
Query: 330 LLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLG 509
L+SKG + YR RR G R+RKSVRG IV + VL L+I+R G +EI GLT+
Sbjct: 60 PLLSKGDAGYRCRRKGVRRRKSVRGSIVSEEICVLNLIILRPGEKEIDGLTNAVNDVSHL 119
Query: 510 PKRASKIRKLFNLSKEDDVRRYVVKRVLPAK--EGKENAKPRHKAPKIQR 653
P++ K+RK+F + E+ ++ +L ++ + K+ K RH +++R
Sbjct: 120 PRKEKKLRKMFGVPDEEKNVVGYIRNILKSECDDPKKIPKIRHNGKRMKR 169
>UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S ribosomal
protein S6; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S6 - Canis familiaris
Length = 154
Score = 121 bits (291), Expect = 3e-26
Identities = 53/77 (68%), Positives = 63/77 (81%)
Frame = +3
Query: 108 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 287
MKLN+S+PATGCQKL E DE K R FYEK M +EV AD LG+EWKGY++R++GGNDKQG
Sbjct: 1 MKLNISFPATGCQKLIEADDERKPRTFYEKHMASEVAADALGEEWKGYMVRISGGNDKQG 60
Query: 288 FPMKQGVLTXFRVRLLM 338
FPMKQ VLT R+ LL+
Sbjct: 61 FPMKQDVLTHDRIHLLL 77
Score = 63.3 bits (147), Expect = 8e-09
Identities = 38/71 (53%), Positives = 47/71 (66%), Gaps = 6/71 (8%)
Frame = +3
Query: 462 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDD-----VRRYVVKRVLP-AKEGKENAK 623
++IPGLTD PR +GPKRAS+IRKLFNLSKEDD + R + KR+ KE KE K
Sbjct: 80 KDIPGLTDTTEPRHVGPKRASRIRKLFNLSKEDDAAQNSILRKIRKRIYKRMKEAKE--K 137
Query: 624 PRHKAPKIQRL 656
+ + K QRL
Sbjct: 138 RQEQIAKRQRL 148
>UniRef50_A2A3R7 Cluster: Ribosomal protein S6; n=1; Homo
sapiens|Rep: Ribosomal protein S6 - Homo sapiens (Human)
Length = 91
Score = 79.8 bits (188), Expect = 9e-14
Identities = 35/46 (76%), Positives = 38/46 (82%)
Frame = +3
Query: 108 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWK 245
MKLN+S+PATGCQKL EV DE KLR FYEKRM EV AD LG+EWK
Sbjct: 1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWK 46
>UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC1AEC UniRef100 entry -
Rattus norvegicus
Length = 227
Score = 69.3 bits (162), Expect = 1e-10
Identities = 65/183 (35%), Positives = 93/183 (50%), Gaps = 3/183 (1%)
Frame = +3
Query: 111 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGF 290
KLN+S+ Q L EV + KLR FYEK M E+ + +E N + F
Sbjct: 2 KLNISFLLIVYQILTEVDGKCKLRAFYEKCMTTEITVNFSCEE-----------NADKIF 50
Query: 291 PMKQGVLTXFRVRLLMSKGHS-CYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 467
MKQ VL FRV LL++ HS Y+P R E S++ V +S+L +VI+ G ++
Sbjct: 51 SMKQEVLIHFRVHLLLNNLHSYIYKPLRTREMNYTSLQDA-VKLPISLLNMVIIINGRKD 109
Query: 468 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAK--EGKENAKPRHKAP 641
IPG T +R PKR +I+ F++S +K VL K + K++ KPR K
Sbjct: 110 IPGQT-----KRWAPKRWRRIQS-FSVS---------LKTVLSTKKPQNKDSKKPRPKTH 154
Query: 642 KIQ 650
K+Q
Sbjct: 155 KVQ 157
>UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S6E - Ignicoccus hospitalis KIN4/I
Length = 236
Score = 62.9 bits (146), Expect = 1e-08
Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 2/105 (1%)
Frame = +3
Query: 147 KLFEV-VDEHKLRIFYEKRMGAEVEADQLGDEW-KGYVLRVAGGNDKQGFPMKQGVLTXF 320
K F++ ++ R F KR+G V A LG E KG L + GG+D+ GFPM+ +
Sbjct: 133 KAFQITIEGENARKFIGKRIGETVPASILGIETLKGLQLEIRGGSDESGFPMRPDIPGPV 192
Query: 321 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 455
+ R L+S G + PR GER+RK+VRG + ++ + IV++
Sbjct: 193 KKRALLS-GPPGFWPREKGERRRKTVRGNTISEDIVQINTKIVKQ 236
>UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila
melanogaster|Rep: IP07914p - Drosophila melanogaster
(Fruit fly)
Length = 147
Score = 62.9 bits (146), Expect = 1e-08
Identities = 44/120 (36%), Positives = 62/120 (51%), Gaps = 3/120 (2%)
Frame = +3
Query: 294 MKQGVLTXFRVR---LLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQ 464
MK V + +R L+ K HSC+ PR + RK K+VR V+AN+S L LV+++K
Sbjct: 6 MKSSVYSYVHIRGRLRLLKKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS 65
Query: 465 EIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPK 644
P RLGP R+S I K++ L +EDD V+P K + + K R A K
Sbjct: 66 ----------PCRLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKKRQNATK 108
>UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1;
Thermococcus kodakarensis KOD1|Rep: 30S ribosomal
protein S6e - Pyrococcus kodakaraensis (Thermococcus
kodakaraensis)
Length = 125
Score = 62.9 bits (146), Expect = 1e-08
Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 9/122 (7%)
Frame = +3
Query: 111 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLG---DEWKGYV------LRV 263
KL +S P G K E+ ++ +R+G E+ A +LG E G L++
Sbjct: 5 KLVISNPKNGVAKQVEISGPEADKLI-GRRIGEEIPASELGLNLSEIFGEEIPADAKLKI 63
Query: 264 AGGNDKQGFPMKQGVLTXFRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALV 443
GG DK GFPM+ V RV++L+S+G +RPR GER++K+V G + N+ + +
Sbjct: 64 TGGTDKDGFPMRPDVHGPRRVKILLSRGPG-FRPRERGERRKKTVHGNTISPNIVQVNMK 122
Query: 444 IV 449
IV
Sbjct: 123 IV 124
>UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Pyrococcus
furiosus
Length = 125
Score = 62.1 bits (144), Expect = 2e-08
Identities = 40/107 (37%), Positives = 60/107 (56%), Gaps = 9/107 (8%)
Frame = +3
Query: 111 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQL--------GDEWKGYV-LRV 263
KL +S P +G K E+ ++ KR+G ++ A +L G E+ V L +
Sbjct: 5 KLVISDPKSGIAKQVEITGAETEKLI-GKRIGDQIPAKELNINLNELFGKEFPEDVKLEI 63
Query: 264 AGGNDKQGFPMKQGVLTXFRVRLLMSKGHSCYRPRRDGERKRKSVRG 404
GG DK GFPM+ + RVR+L+SKG +RP+ GER++K+VRG
Sbjct: 64 RGGTDKDGFPMRPDIHGPRRVRVLLSKGPG-FRPKEKGERRKKTVRG 109
>UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2;
Methanobacteriaceae|Rep: 30S ribosomal protein S6e -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 130
Score = 61.3 bits (142), Expect = 3e-08
Identities = 33/91 (36%), Positives = 55/91 (60%)
Frame = +3
Query: 198 RMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTXFRVRLLMSKGHSCYRPRRDG 377
++G E LG KGY LR+ GG+DK GFPMK+ V R + L++ G + ++P + G
Sbjct: 30 KIGEEFNGGVLG--LKGYKLRITGGSDKNGFPMKEDVDGTRRFKSLVN-GGTGFKPTKKG 86
Query: 378 ERKRKSVRGCIVDANLSVLALVIVRKGAQEI 470
R+RK+VRG + ++S + + + +G Q +
Sbjct: 87 LRRRKTVRGNTIADDISQINVKVSERGEQTL 117
>UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7;
Euryarchaeota|Rep: 30S ribosomal protein S6e -
Archaeoglobus fulgidus
Length = 129
Score = 60.9 bits (141), Expect = 4e-08
Identities = 40/115 (34%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Frame = +3
Query: 120 VSYPATG--CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFP 293
+S P TG QK+ E + ++L K++G +V + + D Y L++ GG D+ GFP
Sbjct: 7 ISDPKTGRAYQKVVEGANANRL---IGKQIG-DVISGTIVDLPPDYELKITGGTDRDGFP 62
Query: 294 MKQGVLTXFRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKG 458
M+ + R RLL+S G +RP+ G RKRK VRG ++ ++ + V+V+ G
Sbjct: 63 MRPDLPGTARRRLLLSGGVG-FRPKEKGLRKRKGVRGRVISKDILQINTVVVKHG 116
>UniRef50_Q3LVW0 Cluster: Ribosomal protein S6; n=1; Bigelowiella
natans|Rep: Ribosomal protein S6 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 239
Score = 58.4 bits (135), Expect = 2e-07
Identities = 43/147 (29%), Positives = 77/147 (52%), Gaps = 2/147 (1%)
Frame = +3
Query: 108 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 287
MK+N++ P G Q + DE I K +G +E LG+++ + GG+DKQG
Sbjct: 1 MKINIADPILGTQYSIKRDDEFIEHIIGRK-IGDTIEGSILGEDFSRNEFLINGGHDKQG 59
Query: 288 FPMKQGVLTXFRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGA 461
F +K+ + T R+++ + KG R +R K+++VRG I+ + +S + LV +
Sbjct: 60 FLLKKNLNTFERLKINVKKGSLGNRSHFKRKNLTKKRTVRGGILSSEISSINLVKLPNNV 119
Query: 462 QEIPGLTDGNVPRRLGPKRASKIRKLF 542
+E + ++L KR +K++ LF
Sbjct: 120 KE--SSVFPSKEQKLA-KRVTKLKTLF 143
>UniRef50_Q01CM6 Cluster: Chromosome 03 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 03 contig 1, DNA
sequence - Ostreococcus tauri
Length = 211
Score = 56.4 bits (130), Expect = 9e-07
Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 4/119 (3%)
Frame = -2
Query: 578 DITTYIIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNNKSQDREIGVNNTST 399
D+ +IFF + E+LT+ T T + I ++R+ L N++ Q + ++ +T
Sbjct: 95 DVLADVIFFGQSEELTNLARTLRTTETRHFGIGEARDVGVALLDNDQVQHGNVLGDDATT 154
Query: 398 ----N*FTFSLSIAARSVT*VAL*HQKTNTKXCQDALFHRESLLVVAASDTKYIALPFI 234
+ FT + ++AA + AL H++ +T Q AL H E+LLVV D + ++LPF+
Sbjct: 155 ARLASAFTLASAVAAEAAR--ALGHEQEHTLVRQHALLHAEALLVVTTHDLEDVSLPFL 211
>UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Methanococcus
maripaludis
Length = 124
Score = 55.6 bits (128), Expect = 2e-06
Identities = 27/94 (28%), Positives = 55/94 (58%)
Frame = +3
Query: 195 KRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTXFRVRLLMSKGHSCYRPRRD 374
K++G E+ + E +GY L++ GG+D+ GF M+ + ++R+L+ +G Y +
Sbjct: 28 KKIGDEISGSIV--ELEGYKLKITGGSDRCGFAMRHDIHGAMKMRVLLKEGPG-YNVKEK 84
Query: 375 GERKRKSVRGCIVDANLSVLALVIVRKGAQEIPG 476
G R+RKS+RG + +++++ +V G+ + G
Sbjct: 85 GLRRRKSLRGNTISKDITLINTKVVEYGSAPLGG 118
>UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S6e -
Halobacterium salinarium (Halobacterium halobium)
Length = 131
Score = 55.2 bits (127), Expect = 2e-06
Identities = 38/120 (31%), Positives = 62/120 (51%)
Frame = +3
Query: 120 VSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMK 299
V+ P +G FEV D F + +GA V+ +G + GY + + GG+D G PM+
Sbjct: 8 VADPESGRTYQFEV-DGQDANRFIGREIGAAVDGGAVGLD--GYTVEITGGSDDAGRPMR 64
Query: 300 QGVLTXFRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGL 479
+ V + +L+ +G + + P DGERKR +VRG V ++ L + I G + + L
Sbjct: 65 EDVDGSDLMEVLL-EGGAGFNPDEDGERKRVTVRGKEVSEAVAQLNVAIDEHGEEPVAEL 123
>UniRef50_Q980A6 Cluster: 30S ribosomal protein S6e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S6e -
Sulfolobus solfataricus
Length = 214
Score = 54.0 bits (124), Expect = 5e-06
Identities = 33/98 (33%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Frame = +3
Query: 162 VDEHKLRIFYEKRMGAEVEADQL-GDEWKGYVLRVAGGNDKQGFPMKQGVLTXFRVRLLM 338
VD++K ++G EA+QL G K L++ GG+D GFPM+ V+ + ++L+
Sbjct: 121 VDQNKATNLVGLKIGDVFEANQLIGLPVK---LKITGGSDNSGFPMRFDVIGAAKRKILL 177
Query: 339 SKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVR 452
S G + P +GER+RK++RG + + + +IVR
Sbjct: 178 S-GPPGFYPNENGERRRKTIRGNTISQEIVQINTIIVR 214
>UniRef50_A2BJZ7 Cluster: 30S ribosomal protein S6e; n=2;
Desulfurococcales|Rep: 30S ribosomal protein S6e -
Hyperthermus butylicus (strain DSM 5456 / JCM 9403)
Length = 217
Score = 52.4 bits (120), Expect = 2e-05
Identities = 27/68 (39%), Positives = 40/68 (58%)
Frame = +3
Query: 246 GYVLRVAGGNDKQGFPMKQGVLTXFRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANL 425
GY L + GG+D GFPM + + R+L+S G + PR GER+RK+VRG + ++
Sbjct: 146 GYKLLIRGGSDNSGFPMLPSIPGPVKKRVLLS-GPPGFHPREKGERRRKTVRGNTITHDI 204
Query: 426 SVLALVIV 449
+ VIV
Sbjct: 205 VQINTVIV 212
>UniRef50_A7IAP8 Cluster: Ribosomal protein S6e; n=2; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S6e -
Methanoregula boonei (strain 6A8)
Length = 143
Score = 48.8 bits (111), Expect = 2e-04
Identities = 26/69 (37%), Positives = 43/69 (62%)
Frame = +3
Query: 195 KRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTXFRVRLLMSKGHSCYRPRRD 374
K++G EV+A LG GY + + GG+D+ G P ++ + R +LL+++G + P +
Sbjct: 32 KKIGDEVDAGPLG--LAGYKILITGGSDQTGTPARKSLPGAGRRKLLLAEGVG-FHPVME 88
Query: 375 GERKRKSVR 401
GERKRK +R
Sbjct: 89 GERKRKMIR 97
>UniRef50_Q8ZX25 Cluster: 30S ribosomal protein S6e; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S6e -
Pyrobaculum aerophilum
Length = 148
Score = 48.4 bits (110), Expect = 3e-04
Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 4/130 (3%)
Frame = +3
Query: 111 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEW---KGYVLRVAGGNDK 281
KL +S P +G + FE+ D R F ++G E++ L D KG +R+ GG+
Sbjct: 5 KLVLSDPMSGKARQFEIKDPLAQR-FIGLKIGDELDGVILKDLIELPKGAKIRITGGSGI 63
Query: 282 QGFPMKQGVLTXFRVRLLMSKGHSCYRPRRDGERKRKSVRG-CIVDANLSVLALVIVRKG 458
+G PM GV + + +++ G Y P + G +K+K VRG I D+ + + A+++ K
Sbjct: 64 EGAPMHPGVPGPVK-KYILADGPPGYWPPKKGMKKKKLVRGNTISDSIVQINAVIVYPKD 122
Query: 459 AQEIPGLTDG 488
P + G
Sbjct: 123 YTGPPAIPLG 132
>UniRef50_Q9Y9B6 Cluster: 30S ribosomal protein S6e; n=1; Aeropyrum
pernix|Rep: 30S ribosomal protein S6e - Aeropyrum pernix
Length = 235
Score = 46.0 bits (104), Expect = 0.001
Identities = 23/56 (41%), Positives = 33/56 (58%)
Frame = +3
Query: 246 GYVLRVAGGNDKQGFPMKQGVLTXFRVRLLMSKGHSCYRPRRDGERKRKSVRGCIV 413
G ++ GG D G PM GV R ++L++ G + PR GER+RKSVRG ++
Sbjct: 155 GLKFKIRGGTDATGIPMHPGVPGSGRYKVLLA-GPPGFHPRERGERRRKSVRGRMI 209
>UniRef50_A0RYX5 Cluster: Ribosomal protein S6E; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein S6E - Cenarchaeum
symbiosum
Length = 133
Score = 44.4 bits (100), Expect = 0.004
Identities = 28/68 (41%), Positives = 38/68 (55%)
Frame = +3
Query: 201 MGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTXFRVRLLMSKGHSCYRPRRDGE 380
+G+E +A LG E K +R+ GG+DK G PM+ V R +L+S+G R G
Sbjct: 39 IGSEADATALGLEGK---IRITGGSDKSGVPMRPDVHGPARKYVLLSRGVG-LRDAERGG 94
Query: 381 RKRKSVRG 404
R RK VRG
Sbjct: 95 RTRKLVRG 102
>UniRef50_Q978W7 Cluster: 30S ribosomal protein S6e; n=5;
Thermoplasmatales|Rep: 30S ribosomal protein S6e -
Thermoplasma volcanium
Length = 128
Score = 44.4 bits (100), Expect = 0.004
Identities = 33/117 (28%), Positives = 63/117 (53%)
Frame = +3
Query: 120 VSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMK 299
++ P TG E+ E ++ +++G EV D + + GY +++ GG+ GF M+
Sbjct: 8 IADPKTGKTYKREIPSE-RMSSLIGRKIGEEV--DGVFFDLVGYKMKITGGSSVDGFAMR 64
Query: 300 QGVLTXFRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEI 470
+ T + ++L+ K S YR ++G RKR + RG I+ ++++ + L I + G I
Sbjct: 65 PDLQTQGKKQILV-KYTSGYR-GKNGIRKRITARGSIIGSDITQINLKITQYGPTPI 119
>UniRef50_Q8PU79 Cluster: 30S ribosomal protein S6e; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S6e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 136
Score = 44.0 bits (99), Expect = 0.005
Identities = 25/78 (32%), Positives = 42/78 (53%)
Frame = +3
Query: 246 GYVLRVAGGNDKQGFPMKQGVLTXFRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANL 425
GY +++ GG D GF MK + R R+L + G Y P+ G+R+RK +RG + ++
Sbjct: 47 GYKVQITGGCDGSGFVMKPDLPGPRRQRILTATGVG-YVPKLPGQRRRKMMRGKEIAPDI 105
Query: 426 SVLALVIVRKGAQEIPGL 479
+ +V G++ I L
Sbjct: 106 VQVNAKVVEYGSKSIKAL 123
>UniRef50_A6C4P7 Cluster: Pseudouridine synthase; n=1; Planctomyces
maris DSM 8797|Rep: Pseudouridine synthase -
Planctomyces maris DSM 8797
Length = 352
Score = 41.1 bits (92), Expect = 0.038
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 1/123 (0%)
Frame = +3
Query: 279 KQGFPMKQGVLTXFRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKG 458
++G K+GV ++ L +G S + E + + +R + V+ LV +R G
Sbjct: 171 RKGVRFKEGVFRVSGLKYLKKQGKSAFLELTLHEGQNREIRRMMARIGHKVIQLVRIRFG 230
Query: 459 AQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKP-RHK 635
+ L G RRL K+R+L N D+R ++GK+NA P + +
Sbjct: 231 PLNLGKLKTGE-SRRLSDTELKKLRQLLNEKHSPDIRH---------RKGKKNAAPAKTR 280
Query: 636 APK 644
AP+
Sbjct: 281 APR 283
>UniRef50_A7DQN0 Cluster: Ribosomal protein S6e; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein S6e
- Candidatus Nitrosopumilus maritimus SCM1
Length = 137
Score = 39.9 bits (89), Expect = 0.088
Identities = 25/75 (33%), Positives = 39/75 (52%)
Frame = +3
Query: 201 MGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTXFRVRLLMSKGHSCYRPRRDGE 380
+G E +A +G K L++ GG+DK G PM+ + R +L+SKG + G+
Sbjct: 33 LGQETDASVVGLNGK---LKLTGGSDKSGVPMRNDIHGAARKYVLLSKGVG-LQDAEKGQ 88
Query: 381 RKRKSVRGCIVDANL 425
R RK +RG V +
Sbjct: 89 RVRKLMRGNTVSEEI 103
>UniRef50_Q74MJ5 Cluster: 30S ribosomal protein S6e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S6e -
Nanoarchaeum equitans
Length = 126
Score = 39.1 bits (87), Expect = 0.15
Identities = 23/68 (33%), Positives = 39/68 (57%)
Frame = +3
Query: 105 VMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 284
V+K+ VS P +G E + L Y K++G ++ ++G + GY L++ GG+D
Sbjct: 6 VVKIVVSDPKSGKAIQIETKEPQWL---YGKKIGDTIDGSKIGLD--GYELKITGGSDIA 60
Query: 285 GFPMKQGV 308
GFPM++ V
Sbjct: 61 GFPMRKEV 68
>UniRef50_A6L045 Cluster: Putative uncharacterized protein; n=1;
Bacteroides vulgatus ATCC 8482|Rep: Putative
uncharacterized protein - Bacteroides vulgatus (strain
ATCC 8482 / DSM 1447 / NCTC 11154)
Length = 541
Score = 33.5 bits (73), Expect = 7.6
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +3
Query: 438 LVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV 578
L+ V +EI LT GNVP+ + R ++RK NLS EDD+ Y+
Sbjct: 494 LLRVNLSTKEISMLT-GNVPKTINMNRY-RLRKSLNLSSEDDLTDYL 538
>UniRef50_O86476 Cluster: Clumping factor B precursor; n=31;
Staphylococcus aureus|Rep: Clumping factor B precursor -
Staphylococcus aureus
Length = 913
Score = 33.5 bits (73), Expect = 7.6
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +3
Query: 111 KLNVSYPAT-GCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 287
KL+ SY A L EV D+ K RI+YE A ++ GD K YV+ V G D G
Sbjct: 441 KLSDSYYADPNDSNLKEVTDQFKNRIYYEHPNVASIK---FGDITKTYVVLVEGHYDNTG 497
Query: 288 FPMKQGVL 311
+K V+
Sbjct: 498 KNLKTQVI 505
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 766,421,427
Number of Sequences: 1657284
Number of extensions: 15149670
Number of successful extensions: 40502
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 39051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40452
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 82801539422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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