Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_P01
(1022 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.15
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.46
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 24 1.8
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 5.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 5.6
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 26 7.4
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 7.4
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 9.8
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.9 bits (69), Expect = 0.15
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 680 PPTXPPPXPXPPXXXPPPXXPHXXP 754
PP PPP P PP PP P P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 29.9 bits (64), Expect = 0.60
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 677 NPPTXPPPXPXPPXXXPPPXXP 742
NPP PPP P PPP P
Sbjct: 8 NPPPPPPPPGFEPPSQPPPPPP 29
Score = 29.9 bits (64), Expect = 0.60
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 680 PPTXPPPXPXPPXXXPPPXXP 742
PP PPP PP PPP P
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
Score = 28.3 bits (60), Expect = 1.8
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +2
Query: 683 PTXPPPXPXPPXXXPPPXXPHXXPXP 760
P PP P PP PP P P P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 26.2 bits (55), Expect = 7.4
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 653 PXNXKXXPNPPTXPPPXPXPPXXXPPP 733
P N P PP PP PP PPP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPP--PPPP 30
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.46
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +2
Query: 674 PNPPTXPPPXPXPPXXXPPPXXPHXXPXP 760
P PP P P PP P P P P P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 28.7 bits (61), Expect = 1.4
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +2
Query: 674 PNPPTXPPPXPXPPXXXPPPXXPHXXP 754
P PP+ PP PP PPP P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLPASSAP 1741
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 24.2 bits (50), Expect(2) = 1.8
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +2
Query: 680 PPTXPPPXPXPPXXXPPPXXPHXXP 754
PPT P P PPP P P
Sbjct: 224 PPTYTPKQADPLPAPPPPPPPTLPP 248
Score = 22.2 bits (45), Expect(2) = 1.8
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 677 NPPTXPPPXP 706
NPP PPP P
Sbjct: 188 NPPPPPPPPP 197
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 3.2
Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Frame = +2
Query: 674 PNPPTXPPPXP---XPPXXXPPPXXPHXXPXPXXXXXP 778
P P PPP P PP PPP P P P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 5.6
Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Frame = +2
Query: 674 PNPPTXPPPXPX--PPXXXPPPXXPHXXPXPXXXXXP 778
P P+ PPP P PP P P P P P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP 180
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 5.6
Identities = 11/34 (32%), Positives = 11/34 (32%)
Frame = +2
Query: 653 PXNXKXXPNPPTXPPPXPXPPXXXPPPXXPHXXP 754
P P P PP P P PP P P
Sbjct: 1088 PSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAP 1121
Score = 26.6 bits (56), Expect = 5.6
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +2
Query: 680 PPTXPPPXPXPPXXXPPPXXPHXXP 754
PP+ PP P P PP P P
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAP 1217
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 26.2 bits (55), Expect = 7.4
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 677 NPPTXPPPXPXPPXXXPPP 733
NP PPP P PP P P
Sbjct: 801 NPFKAPPPAPLPPPAPPLP 819
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 7.4
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -2
Query: 619 GGFSGGGXGXXGXLLGFFXGXG 554
GGF GG G G L GF G G
Sbjct: 238 GGFGGGPGGFGGGLGGFGGGPG 259
Score = 25.8 bits (54), Expect = 9.8
Identities = 23/75 (30%), Positives = 23/75 (30%)
Frame = -2
Query: 733 GGGVXXGGXGXGGXXXWGVXXXFXXXXXXXXXXXXGXXGGFSGGGXGXXGXLLGFFXGXG 554
GGG G G GG G G GGF GG G G GF G G
Sbjct: 187 GGGFGGFGGGSGGPPP-GPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPG 245
Query: 553 XXXXWXVGFXXXXXG 509
GF G
Sbjct: 246 GFGGGLGGFGGGPGG 260
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.8 bits (54), Expect = 9.8
Identities = 10/28 (35%), Positives = 11/28 (39%)
Frame = +2
Query: 677 NPPTXPPPXPXPPXXXPPPXXPHXXPXP 760
+P P P PP P P H P P
Sbjct: 720 SPAIKPQVTPAPPTPAPTPAVKHHPPPP 747
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.308 0.128 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,628,013
Number of Sequences: 5004
Number of extensions: 18295
Number of successful extensions: 140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 533248662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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