Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_O24
         (1393 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0059 - 394001-394708                                             31   2.8  
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    29   8.7  

>08_01_0059 - 394001-394708
          Length = 235

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 21/65 (32%), Positives = 22/65 (33%)
 Frame = -2

Query: 636 PXPPRXLXXXSXXRPLCXIXASPPRGPXMRXAVXPXFVPXXXAXPPSPXXXPXXPXXXPX 457
           P PPR         P     A PP  P +R    P   P     PPS    P  P   P 
Sbjct: 4   PPPPRRAPPPPATPPPPPRRAPPPPSPPIRPPPPPTPRP-YAPPPPSHPLAPPPPHISPP 62

Query: 456 APXLP 442
           AP  P
Sbjct: 63  APVPP 67



 Score = 29.9 bits (64), Expect = 5.0
 Identities = 20/68 (29%), Positives = 23/68 (33%)
 Frame = -2

Query: 576 ASPPRGPXMRXAVXPXFVPXXXAXPPSPXXXPXXPXXXPXAPXLPXXXXDGPYDFKTXQP 397
           A+PP  P  R A  P   P     PP+P      P   P AP  P      P       P
Sbjct: 15  ATPP--PPPRRAPPPPSPPIRPPPPPTPRPYAPPPPSHPLAPPPPHISPPAPVPPPPSPP 72

Query: 396 YHTFXCLV 373
            H    +V
Sbjct: 73  PHIVIIVV 80


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 20/70 (28%), Positives = 22/70 (31%), Gaps = 2/70 (2%)
 Frame = -2

Query: 645  PVXPXPPRXLXXXSXXRPLCXIXASPPRGPXMRXAVXPXFVPXXXAX--PPSPXXXPXXP 472
            P+   PP  L       P       PP  P    A  P   P   +   PP P   P  P
Sbjct: 1133 PLDAPPPPPLPEGPPPLPSDSPPCQPPLPPSPPPATPPPPPPLSPSLPPPPPPPPLPSGP 1192

Query: 471  XXXPXAPXLP 442
               P  P LP
Sbjct: 1193 PPQPAPPPLP 1202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,521,054
Number of Sequences: 37544
Number of extensions: 107764
Number of successful extensions: 168
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4385596824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)