Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_O22
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    28   2.0  
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    28   2.0  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    27   4.6  
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    26   6.1  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   6.1  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    26   8.1  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       26   8.1  

>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +1

Query: 556 ENNSTSDSEAEMQYLFNRSKITASGNPRVKYLSNTCRTETSKRSSGHNPFHERRRALTA 732
           +N S  +    ++ L N ++  ++ + R  + S  C T  S ++ G N  H+R+ +  A
Sbjct: 282 QNLSNDNVSVSVKALENGNEEVSNNHARSPHSSRACNTIPSNKNDGLNDDHQRQDSSVA 340


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
 Frame = +1

Query: 496 LTNGQPIEQHPTEKDVEGPSENNSTSDSEA-------EMQYLFNRSKITASGNPRVKYLS 654
           LTN QP+E  P    ++ P E    ++ EA       E    +N  ++  S +P V   +
Sbjct: 21  LTNVQPVENKPAWISMKSPLEKEIANEYEALKVTERKEDTQDYNEPELHNSNDPTVDLYA 80

Query: 655 NTCRTETSKRS 687
           +T  T+ +  S
Sbjct: 81  DTYATQAATES 91


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
 Frame = +1

Query: 370 SKLYLVEYQHLLERQDIKVRHVLALYLR----SYELTNTVPFNVDALTNGQPIEQHPTEK 537
           SKLY++    L  +Q ++  H L + +R     YE+  T PF    + NG+     P E 
Sbjct: 139 SKLYMLSESPLSTKQILQTLHALNMLIRIRLSLYEIIPT-PFQHFTIANGRCTFTVPNEF 197

Query: 538 DVEGPSENNSTSDSEAEMQYL 600
            V   + +     +    Q++
Sbjct: 198 SVSLTTNSQDPKSTGISFQWI 218


>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +1

Query: 379 YLVEYQHLLERQDIKVRHVLALYLRSYELTNTVPFNVDALTNGQPIEQHP 528
           Y+V+    ++ ++IK    +AL   SY+L   +P  VD L +   +E+ P
Sbjct: 91  YVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIP 140


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
 Frame = +1

Query: 502 NGQPIEQHPTEKDVEGPSENNSTSDSEAEMQY------LFNRSKITASGNPRVKYLSNTC 663
           +G P E   T +D      +N  SD++A            N+     S    ++   +  
Sbjct: 21  DGMPPEY--TNQDPNSDQADNENSDAKAHQPQHSPQHSTENQGHTGTSDTSSLEMELSKL 78

Query: 664 RTETSKRSSGHNPFHERRRALTASTPLRGRSH 759
             E+ +R   H+P HER R+  AS  +  RSH
Sbjct: 79  HPESKQRQLPHSPEHERSRSPIASV-VSYRSH 109


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 664 RTETSKRSSGHNPFHERRRALTAS 735
           R E  +RS GHN + E    LTAS
Sbjct: 624 RCEKKRRSVGHNSYKEHLVLLTAS 647


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +1

Query: 553 SENNSTSDSEAEMQYLFNRSKITASGNPRVKYLSNTCRTETSK 681
           +E+NS  +++ E+Q +   SK  A  + + + ++N    E  K
Sbjct: 223 AEHNSAEENDPELQRVIEESKRQAEEDAKRRNMANDSEAELQK 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,399,689
Number of Sequences: 5004
Number of extensions: 67501
Number of successful extensions: 188
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)