Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_O21
(901 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 82 9e-17
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 44 4e-05
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 42 9e-05
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 42 9e-05
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 41 2e-04
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 37 0.003
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 31 0.22
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 31 0.29
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 30 0.39
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 30 0.52
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 30 0.52
SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom... 30 0.52
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 29 1.2
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 29 1.2
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 27 4.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 4.8
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 4.8
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 6.3
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo... 26 8.4
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo... 26 8.4
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 26 8.4
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 82.2 bits (194), Expect = 9e-17
Identities = 46/103 (44%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Frame = +2
Query: 239 VQPERQKVVCKGVTLRDDTW-GNFKLTNNALVLVMGSKEEDVPAAPVEQTRFVEDMNEAE 415
V PERQKV+ KG L+DD G+ + NA +L+MG+ E A P+ VE E
Sbjct: 36 VPPERQKVIVKGGQLKDDVLLGSVGIKPNATLLMMGTAGELPTAMPIPAVESVEQ----E 91
Query: 416 LATAMDMPEGLINLGNTCYMNATVQCLKTVPELRNALLNYDKS 544
+ P GLINLGNTCYMN+TVQ L+ +PEL +A+ ++ S
Sbjct: 92 ESEDDGYPSGLINLGNTCYMNSTVQMLRAIPELSDAVSQFNSS 134
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 43.6 bits (98), Expect = 4e-05
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +2
Query: 350 EEDVPAAPVEQTRFVEDMNEAELATAMDMPEGLINLGNTCYMNATVQCLKTVPELRNALL 529
+ED P + F E+ E M GL+NLGNTC+MN+ +Q + P L LL
Sbjct: 95 DEDPAFIPPARILFPEEKLSMEWDNIMPNAPGLVNLGNTCFMNSVLQLMTQTPPLVQYLL 154
Query: 530 N 532
+
Sbjct: 155 S 155
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 42.3 bits (95), Expect = 9e-05
Identities = 17/41 (41%), Positives = 28/41 (68%)
Frame = +2
Query: 422 TAMDMPEGLINLGNTCYMNATVQCLKTVPELRNALLNYDKS 544
+++D P GL N GN CY+N+ +Q + LRNA+L+ D++
Sbjct: 608 SSLDTPIGLENTGNLCYLNSLIQYYFIIKPLRNAILDIDEN 648
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 42.3 bits (95), Expect = 9e-05
Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 7/56 (12%)
Frame = +2
Query: 437 PEGLINLGNTCYMNATVQCL-----KTVPEL--RNALLNYDKSSTGGDTAGELTAA 583
P GL NLGNTCYMN +QCL T+P L R L N + + G T G++T+A
Sbjct: 71 PIGLTNLGNTCYMNCVLQCLFACKDLTIPMLQGRGLLQNINTKNPLG-TGGKITSA 125
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 41.1 bits (92), Expect = 2e-04
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = +2
Query: 443 GLINLGNTCYMNATVQCLKTVPELRN 520
GL NLGNTCYMN+ +QCL ELR+
Sbjct: 312 GLSNLGNTCYMNSALQCLTHTRELRD 337
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 37.1 bits (82), Expect = 0.003
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +2
Query: 443 GLINLGNTCYMNATVQCLKTVPELRNALL--NYDK 541
GL NLGN+CYMN+ +QC+ EL L +Y+K
Sbjct: 280 GLYNLGNSCYMNSALQCMIHTHELTKYFLSDSYEK 314
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 31.1 bits (67), Expect = 0.22
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 443 GLINLGNTCYMNATVQCLKTVPELRNALLN 532
GL NLGN+CY+ +T+Q L ++ E LN
Sbjct: 301 GLKNLGNSCYLASTMQSLFSIKEFAIHELN 330
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 30.7 bits (66), Expect = 0.29
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 437 PEGLINLGNTCYMNATVQCL 496
P G IN GN C+MN+ +Q L
Sbjct: 132 PRGFINTGNICFMNSILQAL 151
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 30.3 bits (65), Expect = 0.39
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 422 TAMDMPEGLINLGNTCYMNATVQCLKTVPELRNALLNY 535
T D GL N GNTCY+++ + L + R++L +Y
Sbjct: 35 TLTDRFYGLTNYGNTCYVSSVLVSLYHLKPFRDSLNSY 72
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 29.9 bits (64), Expect = 0.52
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +2
Query: 281 LRDDTWGNFKLTNNALVLVMGSKEEDVPAAPVEQTRFVEDMNEAELATAMDMPE 442
+ D+ W NF N LV + + ++EDM+E E+ A ++PE
Sbjct: 631 INDEKWQNF--VNKTLVETRNRDNQLLGGLEPSMVGYLEDMDEGEMLDANNLPE 682
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 29.9 bits (64), Expect = 0.52
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 443 GLINLGNTCYMNATVQCLKTVPELRNALLNYDKSSTGGDTAGELTAALSETVS 601
G+ NLG TC+M+ +Q + P +RN + +ST +T A+ + S
Sbjct: 146 GIQNLGATCFMSVILQSILHNPLVRNLFFSGFHTSTDCKRPTCMTCAIDDMFS 198
>SPBC428.13c |mob1||protein kinase regulator
Mob1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 29.9 bits (64), Expect = 0.52
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 204 YRFIVCIHLHIWVHFLAPFYLH*NVRHFGLFC 109
Y I C H H+ V YL+ + +HF FC
Sbjct: 157 YAHIYCSHFHVMVAMELESYLNTSFKHFVFFC 188
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 443 GLINLGNTCYMNATVQCLKTVPELRNALLNYDKSSTGG 556
GL N G TCYMN+ +Q L + R + S G
Sbjct: 214 GLKNQGATCYMNSLLQSLYIIHAFRRIVYQIPTDSPQG 251
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 443 GLINLGNTCYMNATVQCLKTVPELRNALLNYDKS 544
GL NLG TC+ N+T+Q L L + + + S
Sbjct: 209 GLKNLGATCFFNSTLQVLCACEALHDVISPFQYS 242
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 443 GLINLGNTCYMNATVQCL 496
GL N G TCYMN+ +Q L
Sbjct: 231 GLKNQGATCYMNSLLQSL 248
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 378 STGAAGTSSSLLPMTSTKALFVNLKLPHVSSRNVTPLQTT 259
ST + GTSSS LP TST + +P + + TP+ T
Sbjct: 321 STSSTGTSSSPLPSTSTSCT-TSTSIP-PTGNSTTPVTPT 358
>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 481
Score = 26.6 bits (56), Expect = 4.8
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 384 HVLSKT*MKLNWLQPWICQRVSSTWVTLVT*M--LQCSV*KRSLNLEMPC 527
HV ++ +K L P C+++S WV L + + SV + +NL C
Sbjct: 401 HVTYRSLLKAYCLLPSTCEQISQAWVNLEYRLEAISISVADKEINLLKDC 450
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 26.2 bits (55), Expect = 6.3
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = -1
Query: 415 FSFIHVFDKTCLFHWCCGHVFLFTAHDKY*GVIRQFKIAPCV---IP*CDSFANDFLSLW 245
+SFIHV D + FL T + + +RQ I C+ + D F+ + W
Sbjct: 860 WSFIHVHDCNVISEVIPDQRFLRTLTEHFMIDLRQLDIVTCLKKALVTLDEFSAPLYATW 919
Query: 244 LDTL 233
L TL
Sbjct: 920 LTTL 923
>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 25.8 bits (54), Expect = 8.4
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 440 EGLINL-GNTCYMNATVQCLKTVPELRNALLNYDKSSTGGDTAGELTAALS 589
+GL N+ GN C++N +Q L + L L SST T EL L+
Sbjct: 49 KGLYNVSGNDCFLNCVLQSLASQESLLEILKLRCSSSTLYATLYELLQKLN 99
>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 432
Score = 25.8 bits (54), Expect = 8.4
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -2
Query: 243 WTPCQCKYLRLEQY 202
W PC CK L+L+++
Sbjct: 72 WIPCTCKILKLKEF 85
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 25.8 bits (54), Expect = 8.4
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 407 EAELATAM-DMPEGLINLGNTCYMNATVQCLKTVPELRNALLNYDKSSTGGDTAG 568
E++++TA+ + L GN N C+ T+P L N + KS GG G
Sbjct: 147 ESDISTALKSYLQSLCENGN----NLVKTCIDTIPILDNKVSEILKSEAGGQILG 197
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,804,077
Number of Sequences: 5004
Number of extensions: 53523
Number of successful extensions: 146
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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