Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_O20
(878 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 32 0.094
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 32 0.12
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 31 0.16
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo... 31 0.29
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 30 0.50
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 29 1.2
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 27 2.7
SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomy... 27 2.7
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 27 3.5
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 27 4.7
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr... 26 6.1
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 8.1
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 26 8.1
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 32.3 bits (70), Expect = 0.094
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = -1
Query: 524 SSSLVAASLPVDRPHTLNIS-AVFNKIGRNSSVTLTSPLYINVNKVFNEAVLISCNTIIG 348
SS++V +S P+ LN S A+ + NSS +TS +N + + + +I+ + +IG
Sbjct: 3434 SSTVVNSSTPITSSSVLNSSTAIASSSILNSSTPITSSSVLNSSTPISSSTVITSSVVIG 3493
Query: 347 S 345
S
Sbjct: 3494 S 3494
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 31.9 bits (69), Expect = 0.12
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +1
Query: 496 GSEAATKDDEKSAGPVQPKKRKKSEHEDXNNKCKKISTKVETPPNTSITIDASNTSN 666
GSEA D +S+ + KK+K E++D K +K K E + +++ N N
Sbjct: 162 GSEALDDGDIESSEKDKKKKKKSKENDDAPKKDRKTRKKEEKARKLASMLESENKDN 218
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 31.5 bits (68), Expect = 0.16
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -3
Query: 636 TCIRXSLDFCRNFLAFIIXIFMFTFLAFFWLYWSSRFLI 520
TC++ + F R L + +F F+ + F W+Y + L+
Sbjct: 237 TCVKPKIRFSRFILLSVTVVFTFSLILFPWIYMDYKTLL 275
>SPAC7D4.06c |alg3||dolichol-P-Man dependent
alpha|Schizosaccharomyces pombe|chr 1|||Manual
Length = 406
Score = 30.7 bits (66), Expect = 0.29
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 600 FLAFIIXI-FMFTFLAFFWLYWSSRFLIIFGGSF 502
F+ I+ I F FLA+FW YW+ F FG +F
Sbjct: 215 FVIIIVQILFSIPFLAYFWSYWTQAF--DFGRAF 246
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 29.9 bits (64), Expect = 0.50
Identities = 21/61 (34%), Positives = 32/61 (52%)
Frame = +1
Query: 151 ANQEISLKWNGYQSNILTNVKELYRDEGLSDVTLVSDGQCFKAHKVILSANSSVFKSIFQ 330
++ E+ L + G ILT+ E Y+ + SDVT+ F +HK IL A SS + +
Sbjct: 593 SSNEMQLLFEG-SIPILTSY-ENYK-QSFSDVTIYCGTSMFHSHKFILCARSSFLRKLLL 649
Query: 331 Q 333
Q
Sbjct: 650 Q 650
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 484 GLSTGSEAATKDDEKSAGPVQPKKRKKSEHEDXNNKCKKISTK 612
G ST EA+T+D + +A P K+KK+ K+I+ K
Sbjct: 591 GNSTNKEASTEDTKANATASAPNKKKKTVETLQQQVIKEIARK 633
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 27.5 bits (58), Expect = 2.7
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 262 GQCFKAHKVILSANSSVFKSIFQQ-NPHKDPIIVLHDINTASLKTLLTFMY 411
G+ F AHK L+A SS FKS F + P + I V H +++L ++Y
Sbjct: 176 GRVF-AHKFYLAARSSYFKSKFSKLGPSEHEIEVKH--FAKEFESILRYLY 223
>SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 284
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +1
Query: 238 SDVTLVSDGQCFKAHKVILSANSSVFKSIFQQNPHKD 348
SD TL+ G+ + H + L + + + + + NP D
Sbjct: 37 SDTTLIIKGETYHLHALFLGRSPVLLQKLIENNPKGD 73
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = -3
Query: 156 ICHILTLVSHRVWYNFVEEIIEKHKS-TSKLNKRKTK 49
+C + V H+ + ++E+II KHK+ + +N ++TK
Sbjct: 162 VCQVRQKVLHKRTFLYLEQIILKHKAHMNTVNIKETK 198
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +1
Query: 550 KKRKKSEHEDXNNKCKKISTKVETPPNTSITIDASNT 660
KKR+ +E E+ N+ K+ + ++ P N + + + T
Sbjct: 126 KKRRAAERENKNSSVKETAAPIKQPKNANSSSTCTRT 162
>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 454
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 406 MYNGEVNVTEEFLPILLKTAEILRVCGLSTGSEAATKDDEKSAGPVQ 546
M+N VN +EF+ L A IL + GS A+ K D ++ P +
Sbjct: 328 MFNEIVNFQKEFVETLKIPARILNMPTAELGSSASQKYDIEAWMPAR 374
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -1
Query: 530 DFSSSLVAASLPVDRPHTLNISAVFNKIGRNSSV 429
D +S+V++++P+ H S +FN+I SS+
Sbjct: 1746 DVMTSIVSSTIPIVSNHQTEGSQMFNEISSVSSI 1779
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 25.8 bits (54), Expect = 8.1
Identities = 20/83 (24%), Positives = 33/83 (39%)
Frame = +1
Query: 499 SEAATKDDEKSAGPVQPKKRKKSEHEDXNNKCKKISTKVETPPNTSITIDASNTSNVVLK 678
SE + +SA P+ + + ++T +P +TS + SN
Sbjct: 80 SEILFDGNAESAEPLSKRSPPFLAYTPKRAVSATLATTQSSPISTSFNPQLPSNSNT--N 137
Query: 679 VXXLXPPHRLFRRYTNDTGIALL 747
+L YTNDTG++LL
Sbjct: 138 RFDFGSESQLSSNYTNDTGLSLL 160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,080,487
Number of Sequences: 5004
Number of extensions: 61805
Number of successful extensions: 230
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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