Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_O17
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.8  
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    27   5.0  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    26   8.7  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +3

Query: 684  PXXSXPXDXPPXKSIPQXPTLPXXXTGXKKXP 779
            P  S P   PP  S+P  P+ P    G    P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP 1731


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 821 GKXPGGGFXXGXTXGXLFXSXXGXGQGG 738
           G  PGGGF  G   G  + S  G G GG
Sbjct: 439 GSFPGGGFPGGGFPGGSYNS-QGFGMGG 465


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 20/59 (33%), Positives = 23/59 (38%)
 Frame = -2

Query: 876 KGRXAGKGVXXXGXGXGXXEVXRGGVXXGXNXGXSFXXXSGXGAGWXFGGXIXGGGRXG 700
           K + A  G    G G G     RGG   G   G +     G G+   FGG   GG R G
Sbjct: 126 KPKGARNGPAGRG-GRGGFRGGRGGSRGGF--GGNSRGGFGGGSRGGFGGGSRGGSRGG 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,461,851
Number of Sequences: 5004
Number of extensions: 11941
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)