Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_O17
(928 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical pr... 35 0.095
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 32 0.51
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 32 0.51
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 32 0.51
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 32 0.67
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 31 0.88
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 31 0.88
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 3.6
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 29 4.7
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 6.2
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 29 6.2
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 29 6.2
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 29 6.2
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 28 8.2
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 28 8.2
>Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical
protein F58G11.2 protein.
Length = 960
Score = 34.7 bits (76), Expect = 0.095
Identities = 23/63 (36%), Positives = 26/63 (41%)
Frame = -2
Query: 876 KGRXAGKGVXXXGXGXGXXEVXRGGVXXGXNXGXSFXXXSGXGAGWXFGGXIXGGGRXGG 697
+G G+G G G G GG G + G S G G G FGG GGG GG
Sbjct: 808 RGGYGGRGGGFGGTGRGRGGGVFGGGGRGGDFGGS-GNFGGSGGGGSFGGS-GGGGGFGG 865
Query: 696 XXP 688
P
Sbjct: 866 VKP 868
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 32.3 bits (70), Expect = 0.51
Identities = 24/79 (30%), Positives = 25/79 (31%), Gaps = 4/79 (5%)
Frame = -3
Query: 923 RXKRGXXXXXGPXXSGRGGXPEKGXLLXGXGXEXGKXPGGGFXXGXTXGXLF----XSXX 756
+ K G G GG G G G G G GF G T G F
Sbjct: 13 KAKTGFGSGGGFGGGNNGGSGFGGGKNGGTGFGGGNTGGSGFGGGNTGGSGFGGGKAGGS 72
Query: 755 GXGQGGXLGDXFXGGXVXG 699
G G G G F GG G
Sbjct: 73 GFGGGNTCGSGFGGGSTGG 91
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/48 (35%), Positives = 19/48 (39%)
Frame = -2
Query: 840 GXGXGXXEVXRGGVXXGXNXGXSFXXXSGXGAGWXFGGXIXGGGRXGG 697
G G G G G N G F + G+G FGG GG GG
Sbjct: 21 GGGFGGGNNGGSGFGGGKNGGTGFGGGNTGGSG--FGGGNTGGSGFGG 66
Score = 28.3 bits (60), Expect = 8.2
Identities = 21/64 (32%), Positives = 24/64 (37%)
Frame = -2
Query: 888 TXFXKGRXAGKGVXXXGXGXGXXEVXRGGVXXGXNXGXSFXXXSGXGAGWXFGGXIXGGG 709
T F G G G G G G + G G G F + G+G FGG GG
Sbjct: 16 TGFGSGGGFGGG-NNGGSGFGGGKNGGTGFGGGNTGGSGFGGGNTGGSG--FGGGKAGGS 72
Query: 708 RXGG 697
GG
Sbjct: 73 GFGG 76
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 32.3 bits (70), Expect = 0.51
Identities = 24/79 (30%), Positives = 25/79 (31%), Gaps = 4/79 (5%)
Frame = -3
Query: 923 RXKRGXXXXXGPXXSGRGGXPEKGXLLXGXGXEXGKXPGGGFXXGXTXGXLF----XSXX 756
+ K G G GG G G G G G GF G T G F
Sbjct: 13 KAKTGFGSGGGFGGGNNGGSGFGGGKNGGTGFGGGNTGGSGFGGGNTGGSGFGGGKTGGS 72
Query: 755 GXGQGGXLGDXFXGGXVXG 699
G G G G F GG G
Sbjct: 73 GFGGGNTCGSGFGGGSTGG 91
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/48 (35%), Positives = 19/48 (39%)
Frame = -2
Query: 840 GXGXGXXEVXRGGVXXGXNXGXSFXXXSGXGAGWXFGGXIXGGGRXGG 697
G G G G G N G F + G+G FGG GG GG
Sbjct: 21 GGGFGGGNNGGSGFGGGKNGGTGFGGGNTGGSG--FGGGNTGGSGFGG 66
Score = 28.7 bits (61), Expect = 6.2
Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Frame = -2
Query: 882 FXKGRXAGKGVXXX---GXGXGXXEVXRGGVXXGXNXGXSFXXXSGXGAGWXFGGXIXGG 712
F G+ G G G G G G G G F + G+G FGG GG
Sbjct: 34 FGGGKNGGTGFGGGNTGGSGFGGGNTGGSGFGGGKTGGSGFGGGNTCGSG--FGGGSTGG 91
Query: 711 GRXGG 697
GG
Sbjct: 92 SPYGG 96
Score = 28.3 bits (60), Expect = 8.2
Identities = 21/64 (32%), Positives = 24/64 (37%)
Frame = -2
Query: 888 TXFXKGRXAGKGVXXXGXGXGXXEVXRGGVXXGXNXGXSFXXXSGXGAGWXFGGXIXGGG 709
T F G G G G G G + G G G F + G+G FGG GG
Sbjct: 16 TGFGSGGGFGGG-NNGGSGFGGGKNGGTGFGGGNTGGSGFGGGNTGGSG--FGGGKTGGS 72
Query: 708 RXGG 697
GG
Sbjct: 73 GFGG 76
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 32.3 bits (70), Expect = 0.51
Identities = 24/79 (30%), Positives = 25/79 (31%), Gaps = 4/79 (5%)
Frame = -3
Query: 923 RXKRGXXXXXGPXXSGRGGXPEKGXLLXGXGXEXGKXPGGGFXXGXTXGXLF----XSXX 756
+ K G G GG G G G G G GF G T G F
Sbjct: 13 KAKTGFGSGGGFGGGNNGGSGFGGGKNGGTGFGGGNTGGSGFGGGNTGGSGFGGGKTGGS 72
Query: 755 GXGQGGXLGDXFXGGXVXG 699
G G G G F GG G
Sbjct: 73 GFGGGNTCGSGFGGGSTGG 91
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/48 (35%), Positives = 19/48 (39%)
Frame = -2
Query: 840 GXGXGXXEVXRGGVXXGXNXGXSFXXXSGXGAGWXFGGXIXGGGRXGG 697
G G G G G N G F + G+G FGG GG GG
Sbjct: 21 GGGFGGGNNGGSGFGGGKNGGTGFGGGNTGGSG--FGGGNTGGSGFGG 66
Score = 28.7 bits (61), Expect = 6.2
Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Frame = -2
Query: 882 FXKGRXAGKGVXXX---GXGXGXXEVXRGGVXXGXNXGXSFXXXSGXGAGWXFGGXIXGG 712
F G+ G G G G G G G G F + G+G FGG GG
Sbjct: 34 FGGGKNGGTGFGGGNTGGSGFGGGNTGGSGFGGGKTGGSGFGGGNTCGSG--FGGGSTGG 91
Query: 711 GRXGG 697
GG
Sbjct: 92 SPYGG 96
Score = 28.3 bits (60), Expect = 8.2
Identities = 21/64 (32%), Positives = 24/64 (37%)
Frame = -2
Query: 888 TXFXKGRXAGKGVXXXGXGXGXXEVXRGGVXXGXNXGXSFXXXSGXGAGWXFGGXIXGGG 709
T F G G G G G G + G G G F + G+G FGG GG
Sbjct: 16 TGFGSGGGFGGG-NNGGSGFGGGKNGGTGFGGGNTGGSGFGGGNTGGSG--FGGGKTGGS 72
Query: 708 RXGG 697
GG
Sbjct: 73 GFGG 76
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 31.9 bits (69), Expect = 0.67
Identities = 20/59 (33%), Positives = 21/59 (35%)
Frame = -2
Query: 873 GRXAGKGVXXXGXGXGXXEVXRGGVXXGXNXGXSFXXXSGXGAGWXFGGXIXGGGRXGG 697
GR G G G G GG G G + G G G G GGGR GG
Sbjct: 56 GRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGGG 114
Score = 30.7 bits (66), Expect = 1.5
Identities = 24/65 (36%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Frame = -2
Query: 882 FXKGRXAGKGVXXXGXGXGXXEVXRGGVXXGXNXG-XSFXXXSGXGAGW--XFGGXIXGG 712
F GR G G G G G RGG G G +G G W GG GG
Sbjct: 35 FFGGRSGGWG--RPGWGGGGPGWGRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGG 92
Query: 711 GRXGG 697
GR GG
Sbjct: 93 GRGGG 97
Score = 28.3 bits (60), Expect = 8.2
Identities = 19/59 (32%), Positives = 19/59 (32%)
Frame = -2
Query: 873 GRXAGKGVXXXGXGXGXXEVXRGGVXXGXNXGXSFXXXSGXGAGWXFGGXIXGGGRXGG 697
G G G G G RGG G G G G G GGGR GG
Sbjct: 73 GNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGGGGGGGGGRGGGGGGRGGG 131
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 31.5 bits (68), Expect = 0.88
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = -2
Query: 840 GXGXGXXEVXRGGVXXGXNXGXSFXXXSGXGAGWXFGGXIXGGGRXG 700
G G + RGG G G + G G G+ GG GGG G
Sbjct: 280 GGGGYGGDRDRGGDRGGDRGGSRYSTGGGSGGGYRSGGGSSGGGGGG 326
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 31.5 bits (68), Expect = 0.88
Identities = 18/46 (39%), Positives = 19/46 (41%)
Frame = -2
Query: 834 GXGXXEVXRGGVXXGXNXGXSFXXXSGXGAGWXFGGXIXGGGRXGG 697
G G GG G N G G G G FGG + GGG GG
Sbjct: 75 GRGGYGGSGGGAFGGFNGGYG---QGGYGGGGDFGGGMGGGGYGGG 117
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/63 (33%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Frame = -2
Query: 873 GRXAGKGVXXXGXGXGXXEVXRGGVXXGXNXGXSFXXXSGXG-AGWXFGGXIXGGGRXGG 697
G G G+ G G G GG G G G G G GG GGG GG
Sbjct: 163 GGYGGGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGGYGGGGDGG 222
Query: 696 XXP 688
P
Sbjct: 223 YGP 225
Score = 30.3 bits (65), Expect = 2.0
Identities = 22/76 (28%), Positives = 26/76 (34%), Gaps = 4/76 (5%)
Frame = -2
Query: 912 GGXFXLXXTXFXKGRXAGKGVXXXGXGXGXXEVXRGGVXXGXNXGXS----FXXXSGXGA 745
GG F G G G G G G + GG G + G + G G
Sbjct: 178 GGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGGYGGGGDGGYGPSGGYGGGYGPGG 237
Query: 744 GWXFGGXIXGGGRXGG 697
G+ GG GGG G
Sbjct: 238 GYGMGGGGGGGGCPNG 253
Score = 29.9 bits (64), Expect = 2.7
Identities = 22/66 (33%), Positives = 24/66 (36%)
Frame = -3
Query: 893 GPXXSGRGGXPEKGXLLXGXGXEXGKXPGGGFXXGXTXGXLFXSXXGXGQGGXLGDXFXG 714
GP G GG G G G + G GGG G G G G GG + G
Sbjct: 143 GPGGYGMGGYGGGG----GGGGDFGGYGGGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGG 198
Query: 713 GXVXGG 696
G GG
Sbjct: 199 GMGGGG 204
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/53 (35%), Positives = 21/53 (39%)
Frame = -2
Query: 855 GVXXXGXGXGXXEVXRGGVXXGXNXGXSFXXXSGXGAGWXFGGXIXGGGRXGG 697
G G G RGG G + G G G G+ GG GGGR GG
Sbjct: 14 GSSGGGSRGGYGGGGRGGGGGGYSGGRGGGYGGGGGGGYG-GGGYGGGGRGGG 65
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = -2
Query: 840 GXGXGXXEVXRGGVXXGXNXGXSFXXXSGXGAGWXFGGXIXGGGRXG 700
G G G GG G G G G G +GG GGGR G
Sbjct: 23 GYGGGGRGGGGGGYSGGRGGGYGGGGGGGYGGG-GYGGGGRGGGRGG 68
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/57 (35%), Positives = 20/57 (35%)
Frame = -2
Query: 840 GXGXGXXEVXRGGVXXGXNXGXSFXXXSGXGAGWXFGGXIXGGGRXGGXXPXXXXPA 670
G G G GG G G G G G GG GGG GG P PA
Sbjct: 64 GCGGGGGGCGGGGGGCGGGGGCG---GGGGGCGGGGGGCGGGGGCGGGCAPPPPPPA 117
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 29.1 bits (62), Expect = 4.7
Identities = 22/59 (37%), Positives = 24/59 (40%)
Frame = -2
Query: 873 GRXAGKGVXXXGXGXGXXEVXRGGVXXGXNXGXSFXXXSGXGAGWXFGGXIXGGGRXGG 697
GR G G G G G GG G N G + G G G +GG GGG GG
Sbjct: 30 GRWGGWGGNRWGGGGGP-----GG--WGNNGGGGWGRGGGRGGG-DWGGNNGGGGNWGG 80
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/55 (34%), Positives = 19/55 (34%)
Frame = -2
Query: 861 GKGVXXXGXGXGXXEVXRGGVXXGXNXGXSFXXXSGXGAGWXFGGXIXGGGRXGG 697
G G G G G RGG G G G G GG GGG GG
Sbjct: 124 GWGGNNGGGGGGRGGGGRGGDGRGPPGSNGGGDWGGNGGGGRGGGGGRGGGGGGG 178
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.7 bits (61), Expect = 6.2
Identities = 20/59 (33%), Positives = 21/59 (35%)
Frame = -2
Query: 873 GRXAGKGVXXXGXGXGXXEVXRGGVXXGXNXGXSFXXXSGXGAGWXFGGXIXGGGRXGG 697
G G G G G G GG G + G G G G GG GGG GG
Sbjct: 115 GGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGG---GGGGCGGGGGGG 170
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.7 bits (61), Expect = 6.2
Identities = 20/59 (33%), Positives = 21/59 (35%)
Frame = -2
Query: 873 GRXAGKGVXXXGXGXGXXEVXRGGVXXGXNXGXSFXXXSGXGAGWXFGGXIXGGGRXGG 697
G G G G G G GG G + G G G G GG GGG GG
Sbjct: 115 GGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGG---GGGGCGGGGGGG 170
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/65 (29%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
Frame = -2
Query: 888 TXFXKGRXAGKGVXXXGXGX-GXXEVXRGGVXXGXNXGXSFXXXSGXGAGWXFGGXIXGG 712
T F G G G+ G G GG G SG G FG GG
Sbjct: 126 TGFGSGNAGGTGLGSGNAGGTGFGSGNAGGTGFGSGNAGGTGFGSGKAGGTGFGSGKAGG 185
Query: 711 GRXGG 697
GG
Sbjct: 186 TGFGG 190
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/65 (29%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
Frame = -2
Query: 888 TXFXKGRXAGKGVXXXGXGX-GXXEVXRGGVXXGXNXGXSFXXXSGXGAGWXFGGXIXGG 712
T F G G G+ G G GG G SG G FG GG
Sbjct: 126 TGFGSGNAGGTGLGSGNAGGTGFGSGNAGGTGFGSGNAGGTGFGSGKAGGTGFGSGKAGG 185
Query: 711 GRXGG 697
GG
Sbjct: 186 TGFGG 190
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/65 (29%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
Frame = -2
Query: 888 TXFXKGRXAGKGVXXXGXGX-GXXEVXRGGVXXGXNXGXSFXXXSGXGAGWXFGGXIXGG 712
T F G G G+ G G GG G SG G FG GG
Sbjct: 126 TGFGSGNAGGTGLGSGNAGGTGFGSGNAGGTGFGSGNAGGTGFGSGKAGGTGFGSGKAGG 185
Query: 711 GRXGG 697
GG
Sbjct: 186 TGFGG 190
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 28.3 bits (60), Expect = 8.2
Identities = 19/59 (32%), Positives = 20/59 (33%)
Frame = -2
Query: 873 GRXAGKGVXXXGXGXGXXEVXRGGVXXGXNXGXSFXXXSGXGAGWXFGGXIXGGGRXGG 697
G G G G G GG+ G G GAG GG G GR GG
Sbjct: 493 GETPAAGAGAGGGGGGHVASAGGGISAMTGAGGE---APGGGAGGRGGGAHGGAGRGGG 548
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 28.3 bits (60), Expect = 8.2
Identities = 19/59 (32%), Positives = 20/59 (33%)
Frame = -2
Query: 873 GRXAGKGVXXXGXGXGXXEVXRGGVXXGXNXGXSFXXXSGXGAGWXFGGXIXGGGRXGG 697
G G G G G GG+ G G GAG GG G GR GG
Sbjct: 493 GETPAAGAGAGGGGGGHVASAGGGISAMTGAGGE---APGGGAGGRGGGAHGGAGRGGG 548
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,793,905
Number of Sequences: 27780
Number of extensions: 94084
Number of successful extensions: 746
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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