Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_O16
         (942 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   5.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -2

Query: 479 PPPXXGGGXXXGKXPPXPPPXXGKKKXXXRGGXXFFSPA 363
           PPP   G    G  PP PPP          GG  +++PA
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP-----PAVSAGGSRYYAPA 796


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 479 PPPXXGGGXXXGKXPPXPPPXXGKKK 402
           PPP   G     + PP PPP   KK+
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKR 36


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/34 (32%), Positives = 11/34 (32%)
 Frame = +3

Query: 735 PPXXGGGXXPXREXXXXPGXPPGXPPXAPPXXPP 836
           PP               P  PP  PP  PP  PP
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP 437



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 786 PGXPPGXPPXAPPXXP 833
           P  PP  PP APP  P
Sbjct: 425 PSAPPSLPPSAPPSLP 440


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 692  PRAPPPXXGPXKXXPPPVXGGXXP 763
            P APP   GP    PPP+     P
Sbjct: 1718 PSAPPMPAGPPSAPPPPLPASSAP 1741


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
 Frame = +1

Query: 691  PKGXPPXGRPXKKXPP-PXXGGGPP 762
            P G PP  +P    PP P   G PP
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPP 1141



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
 Frame = +1

Query: 691  PKGXPPXGRPXKKXPP-PXXGGGPP 762
            P G PP  +P    PP P   G PP
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPP 1160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,846,336
Number of Sequences: 5004
Number of extensions: 23535
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)