Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_O14
(975 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 38 0.014
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 38 0.014
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.23
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.23
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.23
AL033514-8|CAA22097.2| 715|Caenorhabditis elegans Hypothetical ... 33 0.41
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 0.94
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 0.94
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 0.94
U42841-13|AAC48170.1| 682|Caenorhabditis elegans Hypothetical p... 31 1.6
Z81472-1|CAB03889.1| 173|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 5.0
U58758-7|AAO38576.1| 220|Caenorhabditis elegans Hypothetical pr... 28 8.8
U58758-4|AAK68614.1| 914|Caenorhabditis elegans Hypothetical pr... 28 8.8
U58758-3|AAK68615.1| 905|Caenorhabditis elegans Hypothetical pr... 28 8.8
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 37.5 bits (83), Expect = 0.014
Identities = 24/70 (34%), Positives = 25/70 (35%)
Frame = +2
Query: 434 PGSXHTXPPPRGXGVWFLGPXPXPXP*XPXPXXLGXXGXXPXPPGGXXXXXPRFXGXPGX 613
PG PPP G+W P P P P P G G P PP P G PG
Sbjct: 281 PGMTPRPPPPPSSGMW---PPPPPPPPGRTPGPPGMPGMPPPPP-------PSRFGPPGM 330
Query: 614 XXFXLXPPXG 643
PP G
Sbjct: 331 GGMPPPPPPG 340
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 37.5 bits (83), Expect = 0.014
Identities = 24/70 (34%), Positives = 25/70 (35%)
Frame = +2
Query: 434 PGSXHTXPPPRGXGVWFLGPXPXPXP*XPXPXXLGXXGXXPXPPGGXXXXXPRFXGXPGX 613
PG PPP G+W P P P P P G G P PP P G PG
Sbjct: 291 PGMTPRPPPPPSSGMW---PPPPPPPPGRTPGPPGMPGMPPPPP-------PSRFGPPGM 340
Query: 614 XXFXLXPPXG 643
PP G
Sbjct: 341 GGMPPPPPPG 350
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.5 bits (73), Expect = 0.23
Identities = 24/72 (33%), Positives = 24/72 (33%)
Frame = +2
Query: 437 GSXHTXPPPRGXGVWFLGPXPXPXP*XPXPXXLGXXGXXPXPPGGXXXXXPRFXGXPGXX 616
G PPP G GP P P P P G P PPGG P P
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPP-GGLPPISGGPPPPPPPPGGCPPPPP----PPPPG 778
Query: 617 XFXLXPPXGPXP 652
F PP P P
Sbjct: 779 GFKGGPPPPPPP 790
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.5 bits (73), Expect = 0.23
Identities = 24/72 (33%), Positives = 24/72 (33%)
Frame = +2
Query: 437 GSXHTXPPPRGXGVWFLGPXPXPXP*XPXPXXLGXXGXXPXPPGGXXXXXPRFXGXPGXX 616
G PPP G GP P P P P G P PPGG P P
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPP-GGLPPISGGPPPPPPPPGGCPPPPP----PPPPG 778
Query: 617 XFXLXPPXGPXP 652
F PP P P
Sbjct: 779 GFKGGPPPPPPP 790
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.5 bits (73), Expect = 0.23
Identities = 24/72 (33%), Positives = 24/72 (33%)
Frame = +2
Query: 437 GSXHTXPPPRGXGVWFLGPXPXPXP*XPXPXXLGXXGXXPXPPGGXXXXXPRFXGXPGXX 616
G PPP G GP P P P P G P PPGG P P
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPPPP-GGLPPISGGPPPPPPPPGGCPPPPP----PPPPG 361
Query: 617 XFXLXPPXGPXP 652
F PP P P
Sbjct: 362 GFKGGPPPPPPP 373
>AL033514-8|CAA22097.2| 715|Caenorhabditis elegans Hypothetical
protein Y75B8A.8 protein.
Length = 715
Score = 32.7 bits (71), Expect = 0.41
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -1
Query: 546 PXXPRXXGXGX*GXGXGXGPKNQTPXPRGGGXVCXDP 436
P P G G G G GP Q P P+GGG P
Sbjct: 7 PGGPMYGGAGGGGGGPPRGPPQQPPQPQGGGVAVPFP 43
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.5 bits (68), Expect = 0.94
Identities = 26/88 (29%), Positives = 27/88 (30%), Gaps = 7/88 (7%)
Frame = +2
Query: 410 RGXXXGXFPGSXHTXPPPRGXG--VWFLGPXPXPXP*XPXPXXLGXX-----GXXPXPPG 568
RG GS PPP+G P P P P P G G P PP
Sbjct: 226 RGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPA 285
Query: 569 GXXXXXPRFXGXPGXXXFXLXPPXGPXP 652
G PR P PP G P
Sbjct: 286 GGSPPPPRAGSPPPPPPPRGSPPTGSLP 313
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.5 bits (68), Expect = 0.94
Identities = 26/88 (29%), Positives = 27/88 (30%), Gaps = 7/88 (7%)
Frame = +2
Query: 410 RGXXXGXFPGSXHTXPPPRGXG--VWFLGPXPXPXP*XPXPXXLGXX-----GXXPXPPG 568
RG GS PPP+G P P P P P G G P PP
Sbjct: 247 RGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPA 306
Query: 569 GXXXXXPRFXGXPGXXXFXLXPPXGPXP 652
G PR P PP G P
Sbjct: 307 GGSPPPPRAGSPPPPPPPRGSPPTGSLP 334
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.5 bits (68), Expect = 0.94
Identities = 26/88 (29%), Positives = 27/88 (30%), Gaps = 7/88 (7%)
Frame = +2
Query: 410 RGXXXGXFPGSXHTXPPPRGXG--VWFLGPXPXPXP*XPXPXXLGXX-----GXXPXPPG 568
RG GS PPP+G P P P P P G G P PP
Sbjct: 232 RGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPA 291
Query: 569 GXXXXXPRFXGXPGXXXFXLXPPXGPXP 652
G PR P PP G P
Sbjct: 292 GGSPPPPRAGSPPPPPPPRGSPPTGSLP 319
>U42841-13|AAC48170.1| 682|Caenorhabditis elegans Hypothetical
protein T17H7.1 protein.
Length = 682
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/71 (30%), Positives = 24/71 (33%), Gaps = 2/71 (2%)
Frame = -1
Query: 660 PXKGXGPXGGXXXXXXFPGXPXXRGXXLXXPPGGXGXXPXXPRXX--GXGX*GXGXGXGP 487
P G G GG F G PGG G P G G G G GP
Sbjct: 408 PDFGPGRQGGRGQGPDFGPQDDFSGRRGSGGPGGRGGRGQEPDFGPGGQGGRGQGPDFGP 467
Query: 486 KNQTPXPRGGG 454
++ P RG G
Sbjct: 468 QDDFPGRRGSG 478
>Z81472-1|CAB03889.1| 173|Caenorhabditis elegans Hypothetical
protein C16D6.1 protein.
Length = 173
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = +2
Query: 455 PPPRGXGVWFLGPXPXPXP*XPXPXXLGXXGXXPXPPGGXXXXXP 589
PP R +WF G P P P P P L P P G P
Sbjct: 56 PPYRHNTMWFNGGPPGPPPHGPPPPHLLHALPHPAYPPGHPLHMP 100
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.1 bits (62), Expect = 5.0
Identities = 20/60 (33%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Frame = +2
Query: 482 FLGPXPXPXP*XPXPXXLGXXGXXPXPP---GGXXXXXPRFXGXPGXXXFXLXPPXGPXP 652
F P P P P P G G P PP GG P G P PP P P
Sbjct: 63 FFIPPPVPNGFIPPPP--GPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPP 120
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Frame = +2
Query: 455 PPPRGXGVWFLGPXPXPXP*XPXPXXLGXXGXXPXPP--GGXXXXXPRFXGXP 607
PPP G F+ P P P P P + G P PP GG P F P
Sbjct: 66 PPPVPNG--FIPPPPGPGG-IPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPP 115
>U58758-7|AAO38576.1| 220|Caenorhabditis elegans Hypothetical
protein ZK1127.9d protein.
Length = 220
Score = 28.3 bits (60), Expect = 8.8
Identities = 25/83 (30%), Positives = 26/83 (31%), Gaps = 3/83 (3%)
Frame = -1
Query: 645 GPXGGXXXXXXFPGXPXXRGXXLXXPPG--GXGXXPXXP-RXXGXGX*GXGXGXGPKNQT 475
GP GG P RG PPG G G P G G G G
Sbjct: 42 GPPGGAGSFFGVPPAARGRGGPGMAPPGFAGRGRGFATPGMSSGFAPRGRGMPPGRGGYM 101
Query: 474 PXPRGGGXVCXDPGKXPXXXPRN 406
P RGG V + G P N
Sbjct: 102 PPYRGGYGVAPNGGPGAYGGPYN 124
>U58758-4|AAK68614.1| 914|Caenorhabditis elegans Hypothetical
protein ZK1127.9a protein.
Length = 914
Score = 28.3 bits (60), Expect = 8.8
Identities = 25/83 (30%), Positives = 26/83 (31%), Gaps = 3/83 (3%)
Frame = -1
Query: 645 GPXGGXXXXXXFPGXPXXRGXXLXXPPG--GXGXXPXXP-RXXGXGX*GXGXGXGPKNQT 475
GP GG P RG PPG G G P G G G G
Sbjct: 51 GPPGGAGSFFGVPPAARGRGGPGMAPPGFAGRGRGFATPGMSSGFAPRGRGMPPGRGGYM 110
Query: 474 PXPRGGGXVCXDPGKXPXXXPRN 406
P RGG V + G P N
Sbjct: 111 PPYRGGYGVAPNGGPGAYGGPYN 133
>U58758-3|AAK68615.1| 905|Caenorhabditis elegans Hypothetical
protein ZK1127.9b protein.
Length = 905
Score = 28.3 bits (60), Expect = 8.8
Identities = 25/83 (30%), Positives = 26/83 (31%), Gaps = 3/83 (3%)
Frame = -1
Query: 645 GPXGGXXXXXXFPGXPXXRGXXLXXPPG--GXGXXPXXP-RXXGXGX*GXGXGXGPKNQT 475
GP GG P RG PPG G G P G G G G
Sbjct: 42 GPPGGAGSFFGVPPAARGRGGPGMAPPGFAGRGRGFATPGMSSGFAPRGRGMPPGRGGYM 101
Query: 474 PXPRGGGXVCXDPGKXPXXXPRN 406
P RGG V + G P N
Sbjct: 102 PPYRGGYGVAPNGGPGAYGGPYN 124
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,067,515
Number of Sequences: 27780
Number of extensions: 150046
Number of successful extensions: 404
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2531861596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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