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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_O11
         (1014 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    35   0.016
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    34   0.028
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    33   0.064
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    32   0.11 
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    30   0.45 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.79 
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    29   1.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.8  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.2  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    27   4.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   4.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.2  
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    26   7.4  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   7.4  
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch...    26   9.7  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 305

 Score = 35.1 bits (77), Expect = 0.016
 Identities = 21/49 (42%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = -1

Query: 1014 GRGXKRGGGXGXXGXRXG-GGEGGXXWGXXXGXGRGXGXXXXGXXVGRG 871
            GRG  RGG  G  G R G GG  G   G   G  RG      G   GRG
Sbjct: 10   GRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRG 58



 Score = 31.1 bits (67), Expect = 0.26
 Identities = 22/52 (42%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = -1

Query: 1014 GRGXKRGGGXGXXGXRXGGGEGGXXWGXXXG-XGRGXGXXXXGXXVGRGDGG 862
            GRG   GG  G  G R GG  GG   G   G  GRG      G   G G GG
Sbjct: 17   GRGGFNGGRGGFGGGR-GGARGGGRGGARGGRGGRGGARGGRGGSSG-GRGG 66



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = -1

Query: 1014 GRGXKRGGGXGXXGXRXG-GGEGGXXWGXXXG 922
            GRG  RGG  G  G R G GG  G   G   G
Sbjct: 39   GRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70



 Score = 27.5 bits (58), Expect = 3.2
 Identities = 16/55 (29%), Positives = 17/55 (30%)
 Frame = -2

Query: 1010 GGXRGXEGEXXGXGGGXGAREGXXGXNXXXXXGGEXXXXXGXEWXEGMXGXXEXG 846
            GG  G  G   G GGG G   G          GG      G     G  G  + G
Sbjct: 16   GGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70



 Score = 27.5 bits (58), Expect = 3.2
 Identities = 16/46 (34%), Positives = 16/46 (34%)
 Frame = -1

Query: 1014 GRGXKRGGGXGXXGXRXGGGEGGXXWGXXXGXGRGXGXXXXGXXVG 877
            GRG   GG  G  G   GG  GG         GRG      G   G
Sbjct: 24   GRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKG 69


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 34.3 bits (75), Expect = 0.028
 Identities = 22/62 (35%), Positives = 24/62 (38%)
 Frame = +1

Query: 826  SXXPXXXPXSXXPXIPSXHSXPXXXXXSPPXXSXXXXPXXPSLAPXPPPXPXXSPSXPLX 1005
            S  P   P S  P  P   S P     S P  +    P  PS AP  PP P   P+ P  
Sbjct: 413  STPPVPTPPSLPPSAPP--SLPPSAPPSLPMGAPAAPPLPPS-APIAPPLPAGMPAAPPL 469

Query: 1006 PP 1011
            PP
Sbjct: 470  PP 471



 Score = 33.5 bits (73), Expect = 0.049
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = +1

Query: 835  PXXXPXSXXPXIPSXHSXPXXXXXSPPXXSXXXX-PXXPSLAPXPPPXPXXSPSXPL 1002
            P   P S     P+    P     +PP  +     P  P  AP PPP P  +P+ P+
Sbjct: 432  PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPV 488



 Score = 29.9 bits (64), Expect = 0.60
 Identities = 13/45 (28%), Positives = 17/45 (37%)
 Frame = +3

Query: 663 PXLXXPLXTPTXPXRXRXFPXPSXPPTXPPXXXXXFXPPAXPPPP 797
           P +   + +   P R      P+ PP  PP       PP  PP P
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRP 274



 Score = 29.5 bits (63), Expect = 0.79
 Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
 Frame = +1

Query: 847  PXSXXPXIPSXHSXPXXXXXSPPXXSXXXXPXXPSLAPXPPP--XPXXSPSXPLXPP 1011
            P +  P IP   +       +    S    P  PSL P  PP   P   PS P+  P
Sbjct: 388  PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAP 444



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 19/77 (24%), Positives = 24/77 (31%), Gaps = 1/77 (1%)
 Frame = +1

Query: 787  PPXHVHXRLXXXXSXXPXXXPXSXXPXIPSXHSXPXXXXXSPPXXSXXXXPXXPSLAPXP 966
            PP     R        P   P    P +P   +         P          PSL P  
Sbjct: 376  PPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSA 435

Query: 967  PPX-PXXSPSXPLXPPT 1014
            PP  P  +P+ P  PP+
Sbjct: 436  PPSLPMGAPAAPPLPPS 452



 Score = 25.8 bits (54), Expect = 9.7
 Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
 Frame = +3

Query: 663 PXLXXPLXTPTXPXRXRXFPXPSXPPTXPP--XXXXXFXPPAXPPPPCXXP 809
           P L     T T P        PS PP+ PP          PA PP P   P
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAP 454


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
            protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 33.1 bits (72), Expect = 0.064
 Identities = 19/51 (37%), Positives = 19/51 (37%)
 Frame = -1

Query: 1014 GRGXKRGGGXGXXGXRXGGGEGGXXWGXXXGXGRGXGXXXXGXXVGRGDGG 862
            GRG  RGG  G  G   G   GG   G   G G G      G   G   GG
Sbjct: 139  GRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 18/48 (37%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
 Frame = -1

Query: 1014 GRGXKRGG-GXGXXGXRXGGGEGGXXWGXXXGXGRGXGXXXXGXXVGR 874
            GRG  RGG G    G   GG  GG   G   G   G      G   GR
Sbjct: 146  GRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGGFRGR 193



 Score = 27.1 bits (57), Expect = 4.2
 Identities = 17/46 (36%), Positives = 17/46 (36%)
 Frame = -1

Query: 999 RGGGXGXXGXRXGGGEGGXXWGXXXGXGRGXGXXXXGXXVGRGDGG 862
           RGG  G  G R GG  GG       G G G      G   G   GG
Sbjct: 137 RGGRGGFRGGR-GGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGG 181


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 32.3 bits (70), Expect = 0.11
 Identities = 18/55 (32%), Positives = 20/55 (36%)
 Frame = +1

Query: 835  PXXXPXSXXPXIPSXHSXPXXXXXSPPXXSXXXXPXXPSLAPXPPPXPXXSPSXP 999
            P   P S  P   S  + P      PP  S    P  P  AP PP     +PS P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +1

Query: 907  SPPXXSXXXXPXXPSLAPXPPPXPXXSPSXPLXPP 1011
            +PP  S    P  P   P PP  P      P  PP
Sbjct: 1698 APPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +3

Query: 678  PLXTPTXPXRXRXFPXPSXP-PTXPPXXXXXFXPPAXPPPPCXXP 809
            P+ TP  P R +    P    PT PP       PP+ PP P   P
Sbjct: 1686 PVSTP--PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPP 1728



 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +3

Query: 720  PXPSXPPTXPPXXXXXFXPPAXPPPP 797
            P P   P  P        PP+ PPPP
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
            Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 30.3 bits (65), Expect = 0.45
 Identities = 17/44 (38%), Positives = 17/44 (38%)
 Frame = -1

Query: 1011 RGXKRGGGXGXXGXRXGGGEGGXXWGXXXGXGRGXGXXXXGXXV 880
            RG   GGG G      GG EGG   G      RG G    G  V
Sbjct: 79   RGGHYGGGEGRQNNYRGGREGGYSNGGGYRNNRGFGQWRDGQHV 122


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.79
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 726 PSXPPTXPPXXXXXFXPPAXPPPP 797
           P  PP  PP     F PP+ PPPP
Sbjct: 6   PGNPPPPPP--PPGFEPPSQPPPP 27


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
 Frame = +2

Query: 26  YGNPLRFXLKN--------SXSSXFDETDKDNRHGIRA*EIPLSAQFAEFLHQGK 166
           YG PL F  +N        S S+ F E   D RHG+ +    +S+  A  LH G+
Sbjct: 148 YGQPLHFYRENTSPCLYGSSLSNVFTEKSSDYRHGLGSPTSLVSSNTASKLHLGR 202


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +3

Query: 726 PSXPPTXPPXXXXXFXPPAXPPPPCXXP 809
           P  PPT  P        P  PPPP   P
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPPTLPP 248


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 21/54 (38%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
 Frame = -1

Query: 1014 GRGXKRGGGXGXXGXRXG--GGEGGXXWGXXXGXGRGXGXXXXG-XXVGRGDGG 862
            G G   GG  G  G   G  GG GG   G   G G G G    G    G G GG
Sbjct: 215  GEGHHHGGHGGFGGGPGGFEGGPGGFG-GGPGGFGGGLGGFGGGPGGFGGGPGG 267


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 735 PPTXPPXXXXXFXPPAXPPPP 797
           PP  PP       PP  PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.1 bits (57), Expect = 4.2
 Identities = 14/47 (29%), Positives = 15/47 (31%)
 Frame = +3

Query: 657 P*PXLXXPLXTPTXPXRXRXFPXPSXPPTXPPXXXXXFXPPAXPPPP 797
           P P +  P   P         P    PP  PP        P  PPPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 27.1 bits (57), Expect = 4.2
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 735 PPTXPPXXXXXFXPPAXPPPP 797
           PP  PP       PP  PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 7.4
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +3

Query: 690 PTXPXRXRXFPXPSXPPTXPPXXXXXFXPPAXPPP 794
           P  P      P P+  P  PP       PP  PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/39 (30%), Positives = 14/39 (35%)
 Frame = +3

Query: 681 LXTPTXPXRXRXFPXPSXPPTXPPXXXXXFXPPAXPPPP 797
           L +P  P      P P+  P   P        P  PPPP
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/34 (32%), Positives = 13/34 (38%)
 Frame = +1

Query: 910  PPXXSXXXXPXXPSLAPXPPPXPXXSPSXPLXPP 1011
            PP  +       P+  P PPP P      P  PP
Sbjct: 734  PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = -1

Query: 1008 GXKRGGGXGXXGXRXGGGEGGXXWGXXXGXGRG 910
            G  RGG  G  G    GG GG   G   G GRG
Sbjct: 447  GGSRGGRGGFGGRGGFGGRGGF--GGGRGRGRG 477



 Score = 26.2 bits (55), Expect = 7.4
 Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = -1

Query: 990 GXGXXGXRXG-GGEGGXXWGXXXGXGRGXG 904
           G G  G R G GG GG       G GRG G
Sbjct: 446 GGGSRGGRGGFGGRGGFGGRGGFGGGRGRG 475



 Score = 26.2 bits (55), Expect = 7.4
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = -1

Query: 996 GGGXGXXGXRXGGGEGGXXWGXXXGXGRGXGXXXXG 889
           GG  G  G   G G  G   G   G GRG G    G
Sbjct: 447 GGSRGGRGGFGGRGGFGGRGGFGGGRGRGRGGARSG 482


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
 Frame = +1

Query: 871  PSXHSXPXXXXXSPPXXSXXXXPXXPSL-APXPPPXPXXSPSXPLXPP 1011
            PS  S P     +PP  S    P  P+     PP  P    + P  PP
Sbjct: 152  PSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199



 Score = 26.2 bits (55), Expect = 7.4
 Identities = 19/50 (38%), Positives = 20/50 (40%)
 Frame = +1

Query: 853  SXXPXIPSXHSXPXXXXXSPPXXSXXXXPXXPSLAPXPPPXPXXSPSXPL 1002
            S  P IPS  S P     + P  S    P  PSL    PP P   P  PL
Sbjct: 162  SKAPPIPS--SLPPPAQPAAPVKSP---PSAPSLPSAVPPMPPKVPPPPL 206


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
 Frame = +1

Query: 835  PXXXPXSXXPXIPSXHSXPXXXXXS---PPXXSXXXXPXXPSLAPXPPPXPXXSPSXPLX 1005
            P   P    P +P+    P     S   PP       P  P  +   PP P  S + P+ 
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVP 1162

Query: 1006 PPT 1014
             P+
Sbjct: 1163 KPS 1165



 Score = 25.8 bits (54), Expect = 9.7
 Identities = 27/122 (22%), Positives = 36/122 (29%), Gaps = 8/122 (6%)
 Frame = +3

Query: 669  LXXPLXTPTXPXRXRXFPXPSXPPTXPP--XXXXXFXPPAXPPPPCXXPXXXXXXXXPXX 842
            L   L  P+   R    P P+ PP+ PP          P   PP    P           
Sbjct: 944  LPTKLTRPSNDGRKASGPRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTS 1003

Query: 843  XSXLXXXXHPLXPLXAXSSP------XLXPXXXXXIXPXXPLPRPXPXSXPXXLXLXPSS 1004
             +       P+  L + + P         P       P  P+P   P   P      PS+
Sbjct: 1004 PAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTP-PVPKSSSGAPSA 1062

Query: 1005 PP 1010
            PP
Sbjct: 1063 PP 1064



 Score = 25.8 bits (54), Expect = 9.7
 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
 Frame = +1

Query: 835  PXXXPXSXXPXIPSXHSX----PXXXXXSPPXXSXXXXPXXPSLAPXPPPXPXXSPSXPL 1002
            P   P    P +P+  S     P      PP       P  P  +   PP P  S + P+
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPV 1219

Query: 1003 XPPT 1014
              P+
Sbjct: 1220 PTPS 1223


>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 150

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
 Frame = +3

Query: 681 LXTPTXPXRXRXFPXPSXPPTXPP-XXXXXFXPPAXP 788
           +  P  P      P P+ PPT P       F PPA P
Sbjct: 94  IHNPMPPMSQAYRPPPTEPPTVPAYETSSEFPPPAYP 130


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 13/46 (28%), Positives = 16/46 (34%)
 Frame = +1

Query: 874  SXHSXPXXXXXSPPXXSXXXXPXXPSLAPXPPPXPXXSPSXPLXPP 1011
            S +  P     SP   S    P  P ++   PP     P  P  PP
Sbjct: 1031 SAYEPPTVSVPSPSALSPSVTPQLPPVSSRLPPVSATRPQIPQPPP 1076


>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 287

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 289 SHPVLFLLSDINTVTSNEIRDSIDRLCPSK 200
           S P +  L +    +SNEI DSID + P +
Sbjct: 125 SFPHITFLKESGNSSSNEIYDSIDEIPPQE 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,461
Number of Sequences: 5004
Number of extensions: 39185
Number of successful extensions: 222
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 527257104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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