Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_O10
(878 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom... 33 0.054
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 30 0.50
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 28 2.0
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 27 2.7
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 4.7
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 6.1
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 6.1
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 6.1
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 26 8.1
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch... 26 8.1
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces... 26 8.1
>SPBC776.07 |||mitochondrial Mam33 family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 33.1 bits (72), Expect = 0.054
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Frame = +1
Query: 316 KALHTKGE--RELVEFLTEEIVAERKA--QKVKSLPAEVEGFTVKGDGAEVVLTKQLKDE 483
++ HT G +L+ L+ EI E+ ++ P + V+G A VVL + DE
Sbjct: 49 RSSHTAGNPRSKLINALSSEIDYEKNQVLSEISLPPVNYDIEDVQGS-AVVVLKAKHGDE 107
Query: 484 TIRVTFNVNHTVDSDDFEGDVQTEKQEFSEMRSKPQFE 597
IR+T NV+ V D E+Q+F+E + + +
Sbjct: 108 NIRITMNVSQDVT------DAVPEEQDFTEFEDEQELQ 139
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 29.9 bits (64), Expect = 0.50
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +1
Query: 352 EFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEVVLTKQLKDETIRVTFNVNHTVDSD- 528
E L E+ ER Q +S+P + GF D + +QL+ I N T D D
Sbjct: 128 EVLPSEVELERTYQDQQSVPDAISGFQPDMDPRLREVLEQLEHSDI----NDEETSDFDE 183
Query: 529 DFEGDVQTEKQEFSEMRSKPQFE 597
+FE V + K + SE ++P E
Sbjct: 184 EFEKLVASGKADESEFYAQPFVE 206
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 27.9 bits (59), Expect = 2.0
Identities = 20/49 (40%), Positives = 25/49 (51%)
Frame = +1
Query: 331 KGERELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEVVLTKQLK 477
K ERE+ E L E+ K V +LPA V T KGD + LTK +
Sbjct: 146 KSEREVAEKLANELEKSDKTVFVNNLPARV--VTNKGDYKD--LTKHFR 190
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 27.5 bits (58), Expect = 2.7
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = -1
Query: 386 LRSATISSVRNSTSSLSPFV*SAFNPQPQLQVLEWLCSKLVEARVPSNLREQLMCHIPLV 207
L SAT S+ S SS + F+ ++ P E+ K + R P NL + +PLV
Sbjct: 4 LTSATDSASLESDSSRNQFIINSLLPWYSCSEHEFPHRKARKRRSPKNLDWSVSVQMPLV 63
Query: 206 KSR 198
S+
Sbjct: 64 TSK 66
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.7
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -1
Query: 506 TLNVTRIVSSLSCFVKTT-SAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLSP 333
+LN T ++ S + +T S+ +P T ST+A SAT SS + +TSSL P
Sbjct: 231 SLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSA------SATSSSAQYNTSSLLP 283
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -1
Query: 485 VSSLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNST 348
V+ LS K+ S V S+++G ++ + SA ISS++NST
Sbjct: 1347 VNMLSHKRKSASTSDRRFVNASSTSGMNMPISSSISAKISSIQNST 1392
>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -3
Query: 495 DTNCFIFKLLC*NNFSTVSLYSKAFDFSRERL--DLLCFAFSNYFFCQELY 349
+TN F++ + C + TVSL S A + D +C+ + N EL+
Sbjct: 15 ETNDFLYLMRCCYMYDTVSLVSNAPNIYSIPFFYDRICYDYKNILLKYELF 65
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -3
Query: 801 SRFMSRSYKYPSSTSPATAYTLSFHSP-LYRVISSMPNTSL 682
S ++S S STS Y SFH+P + SS TSL
Sbjct: 793 SLYLSSSSSRTISTSSTNEYNTSFHAPTVSSTTSSSSTTSL 833
>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
3|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -1
Query: 197 FTA-VCVRLTNPLKFAVLTHVCSTLWVALTMPLIFXA 90
FTA VCV NPL+ ++ V ++ + +T P++F A
Sbjct: 101 FTAWVCV---NPLEKSIFGKVAFSVTIGITCPIVFIA 134
>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 25.8 bits (54), Expect = 8.1
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +2
Query: 668 SADEYNDVFGIDEITLYK 721
S +Y DV+G+DE+ L++
Sbjct: 312 SISDYTDVYGVDELQLFE 329
>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 326
Score = 25.8 bits (54), Expect = 8.1
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 502 NVNHTVD-SDDFEG-DVQTEKQEFSEMRSKPQFEVDLVRGDTTLGFHLLLSSRSTC 663
N H+V S DF +V++E + +E S +FE + T LGF L + C
Sbjct: 5 NTLHSVSISTDFPSPNVESEAADVNEYSSTSKFETLGNQSSTNLGFSNSLQDKWDC 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,270,531
Number of Sequences: 5004
Number of extensions: 65989
Number of successful extensions: 214
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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