Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_O09
(885 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.08 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 104 1e-23
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 30 0.38
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c... 28 1.5
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 28 2.0
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce... 27 2.7
SPBC36.08c |cog2||Golgi transport complex subunit Cog2 |Schizosa... 27 2.7
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma... 27 3.6
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 27 3.6
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 26 6.2
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi... 26 6.2
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb... 26 6.2
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 26 6.2
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 26 8.2
>SPAC644.08 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 104 bits (250), Expect = 1e-23
Identities = 56/126 (44%), Positives = 73/126 (57%), Gaps = 1/126 (0%)
Frame = +2
Query: 509 GLIWKKGYDKGDIKGHVYDDVLPALEQWRSVE-GQKIYIYSSGSVQAQKLLFGQSSAGDL 685
G IWKKGY+ ++ H++ DV+PA++ RS++ G ++YIYSSGSV AQKL F S AG+L
Sbjct: 77 GRIWKKGYESNELTSHLFPDVVPAIQ--RSLQLGMRVYIYSSGSVPAQKLYFEHSDAGNL 134
Query: 686 LPLIDGHFDTAVGAKQEATSYTAIVEKIGCKPEEILFLXDIEKXAXAARTXGXXVAXXXR 865
L G++DT +G K E SY IV P E LFL D AAR G R
Sbjct: 135 LKYFSGYYDTTIGLKTECGSYVKIVG--NSNPREWLFLSDNINELKAARKVGLHTGLVVR 192
Query: 866 XXNPPL 883
N P+
Sbjct: 193 PGNDPV 198
Score = 51.6 bits (118), Expect = 1e-07
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +1
Query: 202 KVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWD-EEDVKEAVNALRKLAIEDQEK 378
K LLLDIEGT SISFVKDKLFPYA + +++ ++ +E+++E + I ++
Sbjct: 3 KNLLLDIEGTVGSISFVKDKLFPYAASRYESYVNENYESDENLRELGKTPEEALINLRKL 62
Query: 379 SVEG 390
EG
Sbjct: 63 HAEG 66
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 30.3 bits (65), Expect = 0.38
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 268 PYAEENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKSV 384
PY+ E VK+ L + EEDV +AL L+ QE S+
Sbjct: 355 PYSHEEVKEILKIRCQEEDVDMEPSALDYLSTIGQETSL 393
>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/63 (22%), Positives = 27/63 (42%)
Frame = +1
Query: 196 KSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEEDVKEAVNALRKLAIEDQE 375
+ ++ L +E T TSI + +FPY + F W +D + L L + ++
Sbjct: 182 QDRISALILENTFTSIKDMIPTVFPYGGSIISRFCTEIWSSQDEIRKIKKLPVLFLSGEK 241
Query: 376 KSV 384
+
Sbjct: 242 DEI 244
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 280 ENVKDFLDAQWDE-EDVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKED 429
EN L Q+D+ E + V+ K A+ D + V + I GEDASKE+
Sbjct: 571 ENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDAVEDVAEWLEIHGEDASKEE 621
>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 663
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 542 DIKGHVYDDVLPALEQWRSVEGQKIYI 622
D G+VY+D + L++ + G KIYI
Sbjct: 118 DEDGYVYEDTMKHLDKITEITGAKIYI 144
>SPBC36.08c |cog2||Golgi transport complex subunit Cog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 191
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 760 DNGS-VTGSFLFSTYSSVEMAIDERK*VPSR*LAKKKFLGLDG 635
D+GS + +FL Y + E + P L K+FLGLDG
Sbjct: 7 DSGSDLVDAFLSDAYLNTEELRKDGPFSPDEFLVSKRFLGLDG 49
>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 535
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 415 HPLQEW*PVLQHSSPD 368
HP +EW LQH+SPD
Sbjct: 270 HPFKEWLLNLQHTSPD 285
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = -2
Query: 257 SLTKLIDVVVPSISRSKTLLFLTISPITVFSFAISTDPHQLCRNYFYVFQNL 102
++ +I + P + SK +F+ ITVF S DP+ + N+ +V++ L
Sbjct: 182 TIRDVISLAFPVLD-SKNCVFIMDEIITVFINNSSNDPNLISENWDFVWKKL 232
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 26.2 bits (55), Expect = 6.2
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +2
Query: 668 SSAGDLLPLIDGHFDTAVGAKQEATSYTAIVEKIGCKPEEILFLXDIEKXAXAAR 832
SSA +L I+G F+ A+GA + TA+++ I + I DIE +AR
Sbjct: 491 SSAPTILTDINGDFEMALGASGGSRIVTAVLDSI---IKRIDMDYDIESMVASAR 542
>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 26.2 bits (55), Expect = 6.2
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +2
Query: 413 MLLKRIKSRVWLRMSNGRCRQTVKLPP*SNSXGLIWKKGYDKGDIKGHVYDDVLPALEQW 592
++ R S+V+ R +C + K+ N + W K Y K K VYD L
Sbjct: 19 IMFVRNDSKVF-RFCRSKCHKNFKMK--RNPRKVAWTKAYRKAHGKEMVYDTALAVTAAR 75
Query: 593 RSV 601
R+V
Sbjct: 76 RNV 78
>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 351
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = -2
Query: 725 HLQQCRNGHR*EEVGPQQMTGQKEVSGLGRIQRSKCKSSDPLLNAIVQE 579
+L C +G + ++GP M +VS LGRI+ ++ +A++QE
Sbjct: 165 NLYGCGDGRK-GQLGPVVMKTVNKVSFLGRIEHAQAVVCGVQFSAVLQE 212
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +1
Query: 277 EENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKS 381
EEN + L A DEEDV+ A A ++ A+E E S
Sbjct: 1180 EENWEVALAAAEDEEDVQAAQVARKESALEQTEFS 1214
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.8 bits (54), Expect = 8.2
Identities = 18/79 (22%), Positives = 38/79 (48%)
Frame = +2
Query: 521 KKGYDKGDIKGHVYDDVLPALEQWRSVEGQKIYIYSSGSVQAQKLLFGQSSAGDLLPLID 700
++ YD + + YD ++ EQ+ + GQ+ ++ S G Q Q++ ++ D L+
Sbjct: 535 RRVYDAAKL-ANAYDFIMTLPEQFSTNVGQRGFLMSGG--QKQRIAIARAVISDPKILLL 591
Query: 701 GHFDTAVGAKQEATSYTAI 757
+A+ +K E A+
Sbjct: 592 DEATSALDSKSEVLVQKAL 610
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,496,860
Number of Sequences: 5004
Number of extensions: 74614
Number of successful extensions: 224
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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