Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_O08
         (846 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    24   2.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   2.0  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              22   6.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   8.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   8.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   8.2  

>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 135 YLPCYRKVTCTRIRINSHLC 76
           Y PC +   C+ +RIN + C
Sbjct: 52  YRPCTKNQQCSILRINRNRC 71


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 135 YLPCYRKVTCTRIRINSHLC 76
           Y PC +   C+ +RIN + C
Sbjct: 101 YRPCTKNQQCSILRINRNRC 120


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 99 IRINSHLCICISEMNILNLK 40
          I I S +C+C+S M +  LK
Sbjct: 4  IVIISAICVCVSAMTLDELK 23


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 609 NLQNPLIIRYFYNTNFLLKII*KITLCYMNTQYWS 505
           +L  PL+ +Y   T  L+ +   IT+C +N  + S
Sbjct: 306 SLAIPLLGKYLLFTMILVTLSIWITVCVLNVHFRS 340


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = +1

Query: 490 CKVSVTPILCVHIA*CNFLNNFQQKIRVVKVPYYKRVL 603
           C    TP +CV +   N +     K    + P++  VL
Sbjct: 494 CWTITTPAICVGVFTFNIIKFVPVKYLTYEYPWWSHVL 531


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = +1

Query: 490 CKVSVTPILCVHIA*CNFLNNFQQKIRVVKVPYYKRVL 603
           C    TP +CV +   N +     K    + P++  VL
Sbjct: 547 CWTITTPAICVGVFTFNIIKFVPVKYLTYEYPWWSHVL 584


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 137 RIYRVIGRLPVHVFVLIHIYVFAF 66
           +IY  +G   + +FV+I +Y   F
Sbjct: 203 QIYATLGSFYIPLFVMIQVYYKIF 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,320
Number of Sequences: 438
Number of extensions: 4111
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)