Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_O07
         (924 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    28   2.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.8  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   8.6  

>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 165 RDPHTHRHLPIPQQEP-RGFVRNVDLHDDLGLETIPRNNNQSL 40
           RDP T +H+P  +++   G  R + ++  LG E   R++ +SL
Sbjct: 162 RDPKTKQHIPYSERKSLSGTARYMSINTHLGREQSRRDDLESL 204


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/39 (33%), Positives = 14/39 (35%)
 Frame = +1

Query: 634 PPXPXGXPPXXXXXXXPPPPXXXXKKXXGGGKXXFXPPP 750
           PP P   PP       PPPP         GG   + P P
Sbjct: 761 PPPPP--PPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = +1

Query: 637 PXPXGXPPXXXXXXXPPPPXXXXKKXXGGGKXXFXPPPP 753
           P P   PP       PPPP        G G     PPPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPP-PPPPGVAGAGPPPPPPPPP 783


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +1

Query: 22   TXRXFLKTLIVVSWNCF--EAQVVV*VNVPHE 111
            T   +LK L  V W+CF  + +++V  N P+E
Sbjct: 935  TLLEYLKQLHPVEWDCFVKDTKILVEENAPYE 966


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,755,581
Number of Sequences: 5004
Number of extensions: 25170
Number of successful extensions: 47
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)