Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_O04
         (936 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0425 + 3221303-3222602,3222710-3222928,3223010-3223114,322...    31   1.7  
01_01_0571 - 4233769-4234239,4234340-4234378,4234712-4234839,423...    30   3.0  
07_03_0025 + 12587868-12588429,12591820-12592031,12592212-125926...    29   4.0  
11_04_0423 - 17498569-17498932,17499217-17499992,17503439-17504617     29   7.0  
04_04_0447 - 25297351-25297575,25297663-25298370,25298824-252991...    29   7.0  
12_02_0445 - 19153580-19154269                                         28   9.3  
09_06_0293 + 22086359-22086496,22086604-22087213,22087407-220879...    28   9.3  

>01_01_0425 +
           3221303-3222602,3222710-3222928,3223010-3223114,
           3223274-3223403,3223524-3224464,3224971-3225257
          Length = 993

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = +3

Query: 81  IKYLYTQNVSSTR-PNYL---VDSLQLQIYRLHYSLXAPIALQRVEVPVIQYNTNQFSTV 248
           IKYL   + + T+ P  L    D L L   RLH ++  P+   R    ++ Y++N FS++
Sbjct: 520 IKYLGLASCNLTKIPGALRDIKDRLNLSSNRLHGNVPIPLTTTRDGGVLLDYSSNSFSSI 579

Query: 249 TEE 257
           T +
Sbjct: 580 TRD 582


>01_01_0571 -
           4233769-4234239,4234340-4234378,4234712-4234839,
           4235329-4235470,4235519-4235905,4236045-4236230,
           4236382-4236659,4236757-4236883,4237270-4237442,
           4237610-4237657,4237734-4237767,4237837-4237965,
           4238865-4238960,4239419-4239485,4240030-4240085,
           4240522-4240617,4241127-4242222,4243221-4243402
          Length = 1244

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -2

Query: 440 ESAEKQSQTIQYNVSRSTF*EDGQVIVSLEELLFSTNIFG 321
           E A K  + + Y+V R+    DGQ +V+LE  +FS N  G
Sbjct: 661 EDALKNGEVLAYHVYRTCLRMDGQTLVNLE--IFSNNFDG 698


>07_03_0025 +
           12587868-12588429,12591820-12592031,12592212-12592603,
           12592608-12592965
          Length = 507

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 297 TNTPYPPVPENIRRKQELFQRDNDLPVFLKG 389
           T+TP+PP+   +RR+ +   R+ +LP + KG
Sbjct: 363 TSTPHPPLLHPLRRRSDSAFRECELPRYGKG 393


>11_04_0423 - 17498569-17498932,17499217-17499992,17503439-17504617
          Length = 772

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +3

Query: 189 ALQRVEVPVIQYNTNQFSTVTEEACAAPGKRNLMPGTNTPYPPVPENIRRKQELFQ 356
           ++QRV          + S ++    A+P  R        P+PP PE ++  Q L+Q
Sbjct: 437 SMQRVASHFADALAARLSLLSSPTSASPSPRAAAAAAPYPFPPSPETLKVYQILYQ 492


>04_04_0447 - 25297351-25297575,25297663-25298370,25298824-25299123,
            25299876-25299927,25300530-25300673,25301002-25301258,
            25301533-25301739,25301819-25301992,25302409-25302432,
            25302610-25302677,25304607-25304665,25304802-25304877,
            25304965-25305070,25305268-25305377,25305831-25305995,
            25306571-25306656,25306893-25306957,25307280-25307330,
            25309009-25309056,25309677-25309796,25310226-25310301,
            25310780-25310877,25312149-25312404,25313117-25313238
          Length = 1198

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
 Frame = +3

Query: 96   TQNVSSTRPNYLVDSLQLQ---IYRLHYSLXAPIALQRVEVPVIQYNTNQFSTVTEEACA 266
            T N    +PNYL + L+LQ      L   + + +     +  +  YN    S + E  C 
Sbjct: 1033 TVNSLVEKPNYLRNGLELQSGSFGLLRKEIESVVTTICKKKLLDLYNKRSISELIEVVCV 1092

Query: 267  APGKRNLMPGTNTPYPPVPENIRRKQELFQRDND 368
            A G R   P +      +   IRR  +L+    D
Sbjct: 1093 AVGAREQPPPSTVGRSSIYVIIRRDSKLYIGQTD 1126


>12_02_0445 - 19153580-19154269
          Length = 229

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 252 EEACAAPGKRNLMPGTNTPYPPVPENIRRKQELFQRDNDLPVFLKGGPA 398
           +E    PG    MP  + P+PP P       +L +R+   P   + GPA
Sbjct: 12  DEELPRPGLPPTMPDDDPPFPPCPARSPAAPKLSRRERGAP---RDGPA 57


>09_06_0293 +
           22086359-22086496,22086604-22087213,22087407-22087938,
           22088617-22089151
          Length = 604

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -3

Query: 484 GIAWE*MVCTTPTNPRAQRSKVRRYSIT-SAGPPFRKTGKSLSLW 353
           GI+W  +VCTT T  R Q       +++  AGP    T ++   W
Sbjct: 114 GISWRAVVCTTTTTSRGQDDDAAGRALSLPAGPYVVLTKRARGSW 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,220,105
Number of Sequences: 37544
Number of extensions: 387932
Number of successful extensions: 2633
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2520
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)