Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_O03
         (902 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0483 - 3467813-3467873,3468072-3468154,3468505-3468579,346...    31   1.7  
05_04_0004 + 17059087-17059143,17059182-17059868                       29   3.8  
04_04_0445 + 25280642-25281796                                         29   5.1  

>02_01_0483 -
           3467813-3467873,3468072-3468154,3468505-3468579,
           3468728-3468782,3470595-3470950
          Length = 209

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = -3

Query: 714 GEKADXYPVKRQGSETGERTRELSRGKRPGIFIVLSGFATXDLSVDFCDARQGGGAYGKT 535
           GEK      +R  +E+GE  R+ S G++ G F+  +     ++    CD  QG G+   T
Sbjct: 89  GEKKRRRRARRDTNESGEAIRDGSEGQKEGRFLCHN--MEKEIYAQCCDI-QGQGSCSFT 145

Query: 534 PAT 526
           P T
Sbjct: 146 PIT 148


>05_04_0004 + 17059087-17059143,17059182-17059868
          Length = 247

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 574 KIDAQVXGGETRQDYKDTRPFPPGKLPRALSCFRPLPL 687
           +I A V GG   +D+ D  P+    L  AL    PLPL
Sbjct: 65  EIRAVVGGGRVTEDHVDKLPYLRAALKEALRLHAPLPL 102


>04_04_0445 + 25280642-25281796
          Length = 384

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = -3

Query: 696 YPVKRQGSETGERTRELSRGKRPGIFIVLSGFATXDLSVDFCDARQGGGAYGKTPATRPF 517
           Y ++R   ETG    E +R    G+F   SG      +   CD R     +GK  + R  
Sbjct: 276 YSLRRFARETGRPAEEWARRHEEGMFHYSSGMQAVVAAAGVCD-RVSVFGFGKDASARHH 334

Query: 516 Y 514
           Y
Sbjct: 335 Y 335


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,246,850
Number of Sequences: 37544
Number of extensions: 446265
Number of successful extensions: 1122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)