Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_O02
         (862 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    31   0.89 
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.3  
12_02_0082 - 13372997-13373863,13373928-13374386                       28   8.3  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.3  
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279...    28   8.3  

>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +3

Query: 519 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPL 668
           CWR  +        T  D Q    +    +KD    P + PSC L+F PL
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPL 332


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +3

Query: 351 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 506
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>12_02_0082 - 13372997-13373863,13373928-13374386
          Length = 441

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 642 SCALLFRPLPLTGYXSAFLP 701
           SCALLF P+PL G     LP
Sbjct: 164 SCALLFSPMPLDGPTLGLLP 183


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 300 NESAN---ARGEAVCVLGALPLPRSLTRCAR 383
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>03_05_0640 -
           26326832-26327166,26327295-26327529,26327665-26327908,
           26328389-26328507,26328860-26329050,26329133-26329220,
           26331653-26331715,26331816-26333944,26334084-26334186
          Length = 1168

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 21/69 (30%), Positives = 33/69 (47%)
 Frame = +2

Query: 644 VRSPVPTPAAYGIXVRLSPXREAWRFLIAHAVGISVXVXGRSLQAGAVCTNPPFSPTXAP 823
           V++P P P A     R    R + RFL+A    +++ V    + A  +C  PP  P  +P
Sbjct: 318 VQTPEPEPTASSERARRPRKRSSLRFLVA---PLALVVF---MAAALICVPPP--PVDSP 369

Query: 824 YXVLSVLSQ 850
              L+ LS+
Sbjct: 370 VMPLTALSK 378


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,645,173
Number of Sequences: 37544
Number of extensions: 483905
Number of successful extensions: 1388
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)