Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_O02
         (862 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    27   0.17 
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           27   0.17 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.4  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -1

Query: 742 TYSVSYEKAPRF--PXGRKADXYPVSGRGRNRRAHEG 638
           T+  + E APR   P G     Y +SG G+   A+EG
Sbjct: 14  TFGWTLEDAPRVKTPLGAIKGYYKISGNGKQYEAYEG 50


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -1

Query: 742 TYSVSYEKAPRF--PXGRKADXYPVSGRGRNRRAHEG 638
           T+  + E APR   P G     Y +SG G+   A+EG
Sbjct: 14  TFGWTLEDAPRVKTPLGAIKGYYKISGNGKQYEAYEG 50


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 293 EKTSHTSTLNLKHKMNAIVVV 231
           E    T TLNLKH   A++V+
Sbjct: 56  EDAEDTQTLNLKHLRAAVLVL 76


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 293 EKTSHTSTLNLKHKM 249
           ++  H+STL++ HKM
Sbjct: 238 DENRHSSTLDIDHKM 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,429
Number of Sequences: 438
Number of extensions: 5147
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)