Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_N24
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0619 + 4588779-4588811,4590173-4590245,4590341-4590389,459...    66   5e-11
07_03_0370 - 17366063-17366197,17367445-17367483,17367930-173680...    28   8.7  

>07_01_0619 +
           4588779-4588811,4590173-4590245,4590341-4590389,
           4590473-4590596,4591320-4591370
          Length = 109

 Score = 65.7 bits (153), Expect = 5e-11
 Identities = 28/46 (60%), Positives = 39/46 (84%)
 Frame = +1

Query: 148 DSKREEFRRYLERAGVMDALTKVLVSLYEEPDKPEDALEYVRKHLG 285
           ++K+E FR+YLE +GV+D LTKVLV+LYEE DKP  A+E+V++ LG
Sbjct: 14  EAKKEAFRKYLESSGVLDTLTKVLVALYEENDKPSSAVEFVQQKLG 59


>07_03_0370 -
           17366063-17366197,17367445-17367483,17367930-17368001,
           17368287-17368478,17368660-17368781,17369394-17369496,
           17370786-17370836,17371199-17371275,17371646-17371757
          Length = 300

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +1

Query: 112 KIF*NMSSYKPIDSKREEFRRYLERAGVMDALTKVLV-SLYEEPDKPEDALEYVRKHLGS 288
           KI  N+     + +  +EF + + +AGVM+ +    V S  +  D  E+  E V K L S
Sbjct: 131 KIVNNLMKAPELAATMQEFSKEMTKAGVMEEMVNDAVDSALDSEDMEEEIEEEVDKVLAS 190

Query: 289 DGG 297
             G
Sbjct: 191 VAG 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,953,975
Number of Sequences: 37544
Number of extensions: 230667
Number of successful extensions: 387
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)