Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP10_F_N23
(989 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.33
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.33
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.58
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 1.0
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 28 1.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 4.1
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 7.1
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.7 bits (66), Expect = 0.33
Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Frame = +1
Query: 727 PPRXPXKXXPPPXXXXXPXGXLPPPXAXPPPXXXPP-KXXGGPXXPXGG 870
PP+ PPP P PP A PP PP P P G
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747
Score = 28.3 bits (60), Expect = 1.8
Identities = 16/64 (25%), Positives = 17/64 (26%)
Frame = +3
Query: 489 PXHPGXPPPXGXGGXLPLLXPPTXPPXPPXTXXXXPGXTXXSXXXXGXGPPPXVPRXNLG 668
P HP PP P PP PP + P PPP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPS 1742
Query: 669 CPTP 680
P P
Sbjct: 1743 VPNP 1746
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.33
Identities = 25/92 (27%), Positives = 25/92 (27%), Gaps = 4/92 (4%)
Frame = +3
Query: 498 PGXPPPXGXGGXLPLLXPPTXPPXPPXTXXXXPGXTXXSXXXXGXG--PPPXVPRXNL-- 665
P PPP L PP PP G PPP PR N
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAG 349
Query: 666 GCPTPPXXEKIXGXKKPPXXPXPXTPKXXXXP 761
P PP G PP P P P
Sbjct: 350 SIPLPP-----QGRSAPPPPPPRSAPSTGRQP 376
Score = 29.9 bits (64), Expect = 0.58
Identities = 22/88 (25%), Positives = 25/88 (28%), Gaps = 6/88 (6%)
Frame = +3
Query: 498 PGXPPPXGXGGXLPL------LXPPTXPPXPPXTXXXXPGXTXXSXXXXGXGPPPXVPRX 659
P PP G +PL PP P P T P + PPP +P
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP-- 396
Query: 660 NLGCPTPPXXEKIXGXKKPPXXPXPXTP 743
P P PP P P
Sbjct: 397 GRSAPALPPLGNASRTSTPPVPTPPSLP 424
Score = 29.1 bits (62), Expect = 1.0
Identities = 19/75 (25%), Positives = 20/75 (26%)
Frame = +3
Query: 510 PPXGXGGXLPLLXPPTXPPXPPXTXXXXPGXTXXSXXXXGXGPPPXVPRXNLGCPTPPXX 689
PP G PT P PP P S PP P + P P
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGM 463
Query: 690 EKIXGXKKPPXXPXP 734
PP P P
Sbjct: 464 P--AAPPLPPAAPAP 476
Score = 26.6 bits (56), Expect = 5.4
Identities = 23/82 (28%), Positives = 24/82 (29%), Gaps = 9/82 (10%)
Frame = +3
Query: 510 PPXGXGGXLPLLXPPTXP---------PXPPXTXXXXPGXTXXSXXXXGXGPPPXVPRXN 662
PP G G L PP P P PP P S G PPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRA 384
Query: 663 LGCPTPPXXEKIXGXKKPPXXP 728
+ P P I G P P
Sbjct: 385 VSNP-PAPPPAIPGRSAPALPP 405
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.58
Identities = 15/49 (30%), Positives = 16/49 (32%)
Frame = +3
Query: 507 PPPXGXGGXLPLLXPPTXPPXPPXTXXXXPGXTXXSXXXXGXGPPPXVP 653
PPP +P P P PP P G GPPP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 29.5 bits (63), Expect = 0.77
Identities = 16/46 (34%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Frame = +1
Query: 727 PPRXPXKXXPPPXXXXXPXGXLPPPXAXPPPXXXPPKXXG-GPXXP 861
PP P P P P P PPP PP G GP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Frame = +1
Query: 715 PLXNPPRXPXK-XXPPPXXXXXPXGXLPPPXAXPPP 819
P+ PP P PPP G PPP PPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 498 PGXPPPXGXGGXLPLLXPPTXPPXPP 575
P PPP G G PP PP PP
Sbjct: 762 PPPPPPPGVAGA----GPPPPPPPPP 783
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.1 bits (62), Expect = 1.0
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = -1
Query: 866 PXGXLGPPXXFGGXXXGGGXAXGG-GRXPXGXXXXXGG 756
P G G P FGG G G GG G P G GG
Sbjct: 230 PGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGG 267
Score = 27.5 bits (58), Expect = 3.1
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = -1
Query: 869 PPXGXLGPPXXFGGXXXGGGXAXGGGRXPXGXXXXXGGGXXFXGXRGGXXRGF 711
P G G FGG G G G P G GG G GG GF
Sbjct: 202 PGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGF 254
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -2
Query: 574 GGXGGXVGGXKRGRXPPXPXGGGXPGXWG 488
GG GG GG G PP P G G G +G
Sbjct: 188 GGFGGFGGGS--GGPPPGPGGFGGFGGFG 214
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 28.3 bits (60), Expect = 1.8
Identities = 17/40 (42%), Positives = 17/40 (42%)
Frame = -1
Query: 833 GGXXXGGGXAXGGGRXPXGXXXXXGGGXXFXGXRGGXXRG 714
GG G G A GGGR G GG G RGG G
Sbjct: 26 GGFGGGRGGARGGGRG--GARGGRGGRGGARGGRGGSSGG 63
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 3.1
Identities = 18/66 (27%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Frame = +3
Query: 489 PXHPGXPPPXGXGGX-LPLLXPPTXPPXPPXTXXXXPGXTXXSXXXXGXGPPPXVPRXNL 665
P P PPP +P PP PP P + S PP P+
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPK--- 200
Query: 666 GCPTPP 683
P PP
Sbjct: 201 -VPPPP 205
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/42 (30%), Positives = 13/42 (30%)
Frame = +1
Query: 727 PPRXPXKXXPPPXXXXXPXGXLPPPXAXPPPXXXPPKXXGGP 852
PP P P P LPPP P PP P
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLP 191
Score = 25.8 bits (54), Expect = 9.4
Identities = 19/80 (23%), Positives = 22/80 (27%), Gaps = 1/80 (1%)
Frame = +3
Query: 498 PGXP-PPXGXGGXLPLLXPPTXPPXPPXTXXXXPGXTXXSXXXXGXGPPPXVPRXNLGCP 674
P P PP P P P PP + P + PPP P + P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184
Query: 675 TPPXXEKIXGXKKPPXXPXP 734
PP P P
Sbjct: 185 PSAPSLPSAVPPMPPKVPPP 204
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 4.1
Identities = 25/92 (27%), Positives = 29/92 (31%), Gaps = 1/92 (1%)
Frame = +3
Query: 489 PXHPGXPP-PXGXGGXLPLLXPPTXPPXPPXTXXXXPGXTXXSXXXXGXGPPPXVPRXNL 665
P G PP P P+ P PP P + P S G PP VP+
Sbjct: 1134 PVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS------GIPP-VPKPAA 1186
Query: 666 GCPTPPXXEKIXGXKKPPXXPXPXTPKXXXXP 761
G P P + KP P P P
Sbjct: 1187 GVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.2 bits (55), Expect = 7.1
Identities = 21/80 (26%), Positives = 23/80 (28%)
Frame = +3
Query: 489 PXHPGXPPPXGXGGXLPLLXPPTXPPXPPXTXXXXPGXTXXSXXXXGXGPPPXVPRXNLG 668
P PG P P P PP P + G PP +P G
Sbjct: 484 PFIPGTSAPLPPTTFAPPGVP--LPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPG 541
Query: 669 CPTPPXXEKIXGXKKPPXXP 728
P P I G PP P
Sbjct: 542 YPAVPAMPGIPGATAPPGAP 561
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,805,896
Number of Sequences: 5004
Number of extensions: 20671
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 511279616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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