Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_N22
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    29   0.65 
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    26   8.1  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    26   8.1  

>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 25/86 (29%), Positives = 36/86 (41%)
 Frame = +2

Query: 545 NMDFSKRTVVYVGGYMDSPSYPVASLLAPQYRRQGYNVLLLDTNKFTGHGVSFGCPLHXN 724
           +M+++ RT  + GG    P+    S L  +Y        L  +   T    S G  L+  
Sbjct: 82  SMNYNARTGAFTGG----PNAAGLSSLGGKYNTSSTTTTLTTS---TTLNTSSGTTLNST 134

Query: 725 RCPTHSRDASRPNKARSGSKKTRPDW 802
              T S  A    K++S SKK R DW
Sbjct: 135 SKTTTSSVAVDDQKSKSDSKKERRDW 160


>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 21/78 (26%), Positives = 33/78 (42%)
 Frame = -3

Query: 364 LVCSAKLFQKPSATVLDSRRLAAAAVAWRCESRRDAVMPVKTSAWQYFYAESYRLRQICY 185
           L   +KLF+ P  T      +  A   +   S + AV+P  T A         R R+I +
Sbjct: 218 LTSLSKLFEMPWVTRFVFLYMYLATAFFLLRSLKYAVLPESTMAINATITSHQRSRRIYF 277

Query: 184 AVSGFVVLTKTLF*YTLN 131
               F+  ++ LF Y L+
Sbjct: 278 LF--FIAASQILFMYVLS 293


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 596 SPSYPVASLLA-PQYRRQGYNVLLL 667
           S +Y +A +L  PQY+R GY  LL+
Sbjct: 314 SENYNLACILTLPQYQRHGYGKLLI 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,487,458
Number of Sequences: 5004
Number of extensions: 71164
Number of successful extensions: 162
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)