Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_N22
         (873 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              27   0.17 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   6.4  

>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +3

Query: 546 TWISVSEQLYTSEGIWTVRVIQLQV-YWPHSIDAKDIMFCCWTQISL 683
           T  SV     T  G+ TV +  ++   WP +   K  M+C W Q  L
Sbjct: 36  TAASVVNACQTQTGVATVDIEAVRNGQWPETRQLKCYMYCLWEQFGL 82


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 506  YTYYQMKQLAKDPNMDFSKRTVVYVGGYMDSPSYPVA 616
            YT Y M+ LA     D  K   ++     D+P  P+A
Sbjct: 1149 YTNYSMQVLAFTSGGDGVKSAPIHCQTEQDAPEAPIA 1185


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 6/22 (27%), Positives = 15/22 (68%)
 Frame = +1

Query: 493 KTIYVHLLSNEAISQRPEHGFQ 558
           K +++H+L    + +RP++ F+
Sbjct: 346 KRVFIHILPRLLVMRRPQYKFE 367


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 6/22 (27%), Positives = 15/22 (68%)
 Frame = +1

Query: 493 KTIYVHLLSNEAISQRPEHGFQ 558
           K +++H+L    + +RP++ F+
Sbjct: 346 KRVFIHILPRLLVMRRPQYKFE 367


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +2

Query: 452 LTMTVVGNGNFLTAKRSTYTYYQMKQLAKDPNMDFSKRTVV 574
           +TM V+   +    K      +  +Q   DP + F KRT V
Sbjct: 40  VTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAFKKRTGV 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,981
Number of Sequences: 438
Number of extensions: 4714
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)