Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP10_F_N21
         (1170 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical ...    36   0.055

>AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical
           protein Y46C8AL.2 protein.
          Length = 456

 Score = 35.9 bits (79), Expect = 0.055
 Identities = 39/165 (23%), Positives = 42/165 (25%), Gaps = 3/165 (1%)
 Frame = +2

Query: 398 KNTXTXPXTHXXXHPTKQTXXXQKPXXXXPXKXTQXKXHHPTXQXXTXNXHXXKAPGXXX 577
           K+T T P T      T  T    K     P   T  K    T    T        P    
Sbjct: 270 KSTPTTPTTPTTMKSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTP-TTP 328

Query: 578 TTXXKKQXAKTTXTTXPXXKXHQPTXXXXKPXPNXXKTXXTK---PXKPKXPXPXXNXPN 748
           TT        TT TT         T    K  P    T  T    P  P  P    + P 
Sbjct: 329 TTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPT 388

Query: 749 XAXKPQXXTXNXTRKPXXQQXTAKXXXXTXHKKTPXTTXTPXKTP 883
               P       T     +         T  K TP T  T   TP
Sbjct: 389 TPTTPTTMKSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTMKSTP 433


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.299    0.115    0.333 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,832,343
Number of Sequences: 27780
Number of extensions: 70127
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3192944148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.7 bits)